RnoINT0097393 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163014329-163015350:-
Coord C1 exon
chr1:163015181-163015350
Coord A exon
chr1:163014520-163015180
Coord C2 exon
chr1:163014329-163014519
Length
661 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGCTCGCCCCTGCTTCAAAGCTG
3' ss Score
5.16
Exon sequences
Seq C1 exon
GGGAGCAAAACTGATGGCCCCCAGCTTTACACTGGCCACCATCAAAGGGGATGAGTACACCTTCACATCTAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTTCTGGAGGGGCTCCGGAAGAGGTCTAAGTATGTGGTGGCACTGCAGGACAATCCCAACCCTG
Seq A exon
GTGAGTGACTGCTGATGTGGGTGCCCTGGGTGGTAGACAGACTGTACAACTGTCCTGGCCCTCACGGCAGGTGGCTGGTGCCTTACTATATTTGCTAGACACTGGATGCCAGGCAGAACTGCCTTTACCTGCAGTCCACAGAACACTTTGTCTCTTACTTTCTAGGACAACCTTACCTCCTATCACCAGCTCTGAGTTATATGGGGTCCTCCATACTTAATAACACAATGGCACCCCTCCAGAGCACTATGGAGCTCAGACTCGGAGGGGAGGCACGTGGGAAATGGTGATACACATGCCCATGGGAACCCAGAGGCTGTGGGAATTTGGAGGTCAGATTCTCCTCACAGTCTGGTTAAGGGAGGAAGTATAAATGAGCAGGAGTCCGAGGCAGAGGGCAGAGGAGAGCCACACAGAGAAGCTGGTGTGTCCAAACTGTAATTGCATTGGCTTGACTAAAAGTAGCAAGGAGAAGGAAGGGGGGGGCGCTGCTTCGATGGCTAAATCTGGGTGTGGGGTTTGCATAAAGAATACACAGAGTGAAGGACAGCATAGACCTCAGTGAAGAGCCATGACTCATAGGTCATCCGCCCAAAGGAAGCTGCTCTAACCCACGCTTGCTTTCTGTCCCCATGCACACCTGCTCGCCCCTGCTTCAAAG
Seq C2 exon
CTGGTGAGGAGTCGGGCTTCCTCAGCTTTGCCAAGGGAGACCTCATCATTCTCGACCATGATACCGGCGAGCAGGTCATGAATTCAGGCTGGGCCAATGGCATCAACGAGAGAACCAAGCAGCGTGGAGACTTCCCCACCGACTGTGTCTACGTCATGCCCACTGTCACCTTGCCACCCAGGGAAATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.172
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(13.6=13.8)
A:
NA
C2:
PF146041=SH3_9=PD(84.7=78.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGATGGCCCCCAGCTTTA
R:
ACAATTTCCCTGGGTGGCAAG
Band lengths:
352-1013
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]