GgaINT0104539 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192366840-192367317:-
Coord C1 exon
chr1:192367148-192367317
Coord A exon
chr1:192367031-192367147
Coord C2 exon
chr1:192366840-192367030
Length
117 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AATGGTGTTTTTTCCTGTAGTGG
3' ss Score
7.62
Exon sequences
Seq C1 exon
GGGGGGAAAGCTGCAAGGGCAGAGTTTCACCTTGGCCACCATTAAAGCAGATGAATACACTTTCACCTCCAACAATGCAGAGGATATCCGGGACCTGGTAGTGACATTCCTTGAGGGACTAAGAAAAAGATCCAAGTATGTGGTCACTCTCCAAGACAACCCAAACCCTG
Seq A exon
GTAAGTAAAAGGTTCTGTCCAGTAGCAAATGCATAGGCATATTAATAACTCTAAAAAGACTTGCAAAAAATAAAAAAAATAAAAAATCATACAAACTAATGGTGTTTTTTCCTGTAG
Seq C2 exon
TGGGAGAAGAATCTGGGTTCCTCAGCTTCCTCAAAGGAGATCTCATAGTTCTTGACCAAGACACAGGAGAACATGTGATGAATTCAGGGTGGGCGAATGGATTCAATGAACGAACCAAGCAGAAAGGGGATTTCCCAACAGATTCTGTCTATGTTTTGCCTACTGTCACCATGCCTCCCCTGGAGATCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGGCAGAGTTTCACCTT
R:
CATTCGCCCACCCTGAATTCA
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]