MmuINT0104614 @ mm9
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32127576-32129254:-
Coord C1 exon
chr18:32129091-32129254
Coord A exon
chr18:32127758-32129090
Coord C2 exon
chr18:32127576-32127757
Length
1333 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
3' ss Seq
TATGTAACCTGGACCTGCAGACG
3' ss Score
4.98
Exon sequences
Seq C1 exon
GGACGCCCCAGGAGGGAAGAAGCTGCTTCTCGCCACACTCCAGGAAGAGTACGAGTTCGTCTCCCCCAGCAGCGTGGCTATTGCAGAGATGGTGGCCTTGTTCTTGGGAGGCTTGAAGGAGAGATCTGTGTTCGCCATGGCCCTGCAGGACAGAAGGGCCACAG
Seq A exon
GTGCCCACTGGGAGAGGGAAGGGGCTCATGGGACTGGTGGAGAAGGGCGGCTTCCTCAGATCCACAAGACCCAAAGTGAAGCTTAGGAACACAAGCATCCGTATCATGGGGTCAGCTTCAGCAAGGTCCTCATCTGAAAGGCTTAAAGGAGGTGTGTTACACGTACACTCCACCAACACCACCCATGTTCTCACAGACGCTGGCAAGGTTAACGCACACCTGCAGGGACCTACACCCACACCGTCCCCACAACCACCCCATTATCCCATGTCACAGACACCAGACCAGAGGCTCAGAGAGGGAGATACTTCACCCAGCACCACATAGCTTTCCGTGAAAGTCCTTAATCCAACAAGAGCTGGGCTGGAGCCTATAGGCTAGGCCAGTGTCAGGCTCCAGACATCAACCATCGAGATTGATTACAGGCATTGTAGACAAACTGGCTGCAATTCAGATGCAAGGGCTTTGTAGGAACTCTTTAAAAAAACAAACAAGCAAACAAACAAAAATACCTTATTCACTTTACAATCCACTCACTGCCCCCCTCCAAGTCACCCACTCCCACAATCCTTCCCCCCTCCCCCCTTCTTCTCTGAGTGGGTTGGGGACCCTTGTGTATCCCCCTACCCTGGCACATCATGTCTCTGTGAGGCTAGGCACATCTGAGGCCAGCCAAGGCAGTCCAGCTGGAAGAACGTATTCCACAGACAGGCAACAGCTTTTGGGATAGCCCCTGCTCCAGTTGTTCAGAACCCACATGAAGACCAAGCTGCACATCTGTTACATATGTGTGAGGAGGCCTAGGTCCAGCCCGTGTACGTTCTTGGGTTGGTGGTTCAGTCTCTGAGAGACCCAAAGGTCTAGGTTAGTTGATGCTGTTGATTTCCTATGGAATTCCTATCCCCTCCGGGGCCATAGCTGTAGGAACTCTTAGACTCTATGAGGAACATCAGAGAATGCTTGTCCATTTGCCTGTTAGTTCTCACTCATGGTCATCTAGGAAATATCATCAAAGGCTTACCGGTTTGCACATGGGCTCAGAGGTCAGGCCACAGAGTGCTCTGGCCAGACATGTAAACCACCAGTTATGTACCCCACTCTGCCTCCTGCCCAGCCCCTGGTTAGGTCTCAGAAGTCTAATAGGCTGGGGGCTACAGCAGGTGACAGTAATCTGCACTGTTGTCTCAGAGTTGCCTCAGGCCCATGGCTCTGTGTCTTGGTTTCTTCATATGTCAAAGGATATCATCTCTGAAATGCTAGTGTAGTCTGGGGACTCTGGAGAGCCCTTGGCAAATGTGGCAATTTTGTCTCTATATGTAACCTGGACCTGCAG
Seq C2 exon
ACGATATCACCCTTCTGCCCTTCAAGAAAGGTGACTTACTGATCCTGACCAAGAAACAAGGACTGTTGGCCTCAGAGAACTGGGCTCTGGGTCAGAATGACAGAACTGGCAAGACAGGGCTGGTGCCTACTGCCTGTCTCTACACCATCCCCTCGGTCACCAAGCCCTCAACCCAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-Myo7b:NM_032394:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(14.3=14.3)
A:
NA
C2:
PF146041=SH3_9=PD(83.9=77.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGGAAGAAGCTGCTTC
R:
CAGCTGGGTTGAGGGCTTG
Band lengths:
335-1668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: