DreINT0015008 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28102397-28102849:+
Coord C1 exon
chr6:28102397-28102551
Coord A exon
chr6:28102552-28102667
Coord C2 exon
chr6:28102668-28102849
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TTATTTATTTTTTTCCCCAGACG
3' ss Score
10.67
Exon sequences
Seq C1 exon
AGAAAGGAAGTGTGTTTGTTTGCTGACTCTGAAAGGAGACTTCACACTGAATGCAATCATGGCTGTAGAAATCTCTGATCTGGTAGCCATGTTTCTGGCAGGCCTCATACAACGTTCACAATATGCAGTGGCCCTACAGGAGGTCAACAGACAAG
Seq A exon
GTTAGAGGTCAAACTAGCCATATACATTTCAGCAATTGATGTTTGTGTTTTTATCAACATTTATCATTTGACTTTGTTGTTGCCTAATTTAAATTTTTATTTATTTTTTTCCCCAG
Seq C2 exon
ACGATAGAACAATTCTGAGCTTTAAGAAAGCCGAGCTCATCTACCTTATCAAGGATGAAGAGTTTTCTGCAGCCCGTGGCTGGTTGAAGGGGAAAAATGAGCGGACTGGGGAAATCGGTGCAATCCCTGCAGATGCTGTATTGATTCTTCCAACTCTTACAAAACCGACCAATGAAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(10.9=100),PF0765312=SH3_2=PU(18.0=20.8)
A:
NA
C2:
PF0037313=FERM_M=FE(12.6=100),PF0765312=SH3_2=PD(80.3=80.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACTTCACACTGAATGCA
R:
ATTGCACCGATTTCCCCAGTC
Band lengths:
246-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]