RnoINT0097439 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24754963-24756603:-
Coord C1 exon
chr18:24756440-24756603
Coord A exon
chr18:24755145-24756439
Coord C2 exon
chr18:24754963-24755144
Length
1295 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
3' ss Seq
TATGTGACCTGGACCTGCAGATG
3' ss Score
7.37
Exon sequences
Seq C1 exon
GGACGCCCCAGGTGGGAAGAGTCTGCTTCTGTCCACACTGCATGAAGAGTACGAGTTCGCCTCCCCCAGCAGCGTGGCCATTGCAGAGATGGTGGCCTTGTTCCTGGCAGGCTTGAAGGAGAGATCTGTGTTCGCCATGGCCCTGCAGGACAGGAAGGCCACAG
Seq A exon
GTGCCCATCGGGAGAGGGAAGAGGCTCGTGGGACTAGTGAAGAAGGGTGGCTTTCTCTTATGCACAAGACCCAAAGTGAGGCTTAGGGACACAAGCTTCCACAAGGTCCTCATCTGAAAGGGTTAAAGGAGGTGTGTTACACGTGCAACACCAACACCACCAGTGCTTTCACAGTCACCAGCAAGGTTAATGCACACCTGTAGGGATGTACACACCATCCCCATATCCACCCCAGTATCCCAGGTCACAGACGCCAGACCGGAGGCTCAGAGAGGGGGATAGTTCACCCAGCACCACACAGCCTTCCCTGAGAGTCCTCACTCCAACAAAAGCTGGGCTGGAGTCCATAGGCCACTGTCAGGCTCCAGACCTCAACCATCGAGACTGACCATAAGCATTGTAGTCTGCAATTCAGACAAAAGGGCTTTGTAGGGACTCCTTTTATTCATTTTTTTTTACTTATTCACTTTATAATCCACTTACTGCCCCCCTTCCACTCACCCACTCCCACAATCCTTCTTCCCACTCCTTCCCCTTCTTCTCTGAGTGGATGGAGGCCCCCTGTCTATCCCCCAACCCTGGCACATCAAGTCTCTGTGAAGCTAGGCACATCCTCTCCCACTGATGCAAGATAAGGCAGCCCAGCTAGAAGAACATATCCCACATACAGGCAACAGCTTTTGGGATAGCCCCTGCTCCAGTTGTTCTGGACCCACATGAAGACCAAGCTGCACATCTGCTACATATGTGCGAGGAGGCCTGGGTCCAGCCTGTGTGTGTTCTTTGATTGGTGGTTCAGTCTTTGAGAGACCCAAGGGTTTAGGTTGACTGTTGGTCTTCCTGTGGAGTTCCTACCCCCTCCGGGGCCACATCTGTAGGAACTCTTAAATTCTGTGAGGAACATCAGAGAGTGCTGACCCATTTGTTTGCCTGCTAGTCCTCACGCACAGTCATCTTGGAAATATCATGAGAGGTTTGCACATGGGCTCAGAGGTCAGGCCACAGAGTGCTCTGGCCGGACATGTAAACCACTAGTCATGTATTCTACTATGCCTCCTGCTGGGCTCCTACCCAGCTCCTGGTTAGGTCCCAGAAGTCTATTAGGCTGAGGCTACAGCAAATGACAATAATCTGGACTGTCATCTCAGAGTTGTCTCAGGCGCATGGCTCTGTGCCTCAGTTTCTTCATATGTCAAAGGACACCATCTCTGAGAGGTAGTGAATGCAGTCTGGGGCCTCTGGAGAGCACTCACAAATGTGGCAATTTTGTCTCTATATGTGACCTGGACCTGCAG
Seq C2 exon
ATGATGTCACCCTTCTGCCCTTCAAGAAAGGGGACTTACTGATCCTGACCAAGAAACAGGGACTGTTGGCCTCAGAGAACTGGGTCCTGGGCCAGAACGACAGAACCGGCAAGACAGGACTGGTGCCCACGGCCTGCCTCTACACCATCCCCTCAGTCACCAAGCCCTCAGCCCAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(14.3=14.3)
A:
NA
C2:
PF146041=SH3_9=PD(83.9=77.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGGGAAGAGTCTGCTTC
R:
AGCTGGGCTGAGGGCTTG
Band lengths:
334-1629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]