BtaINT0098341 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4825324-4825835:-
Coord C1 exon
chr2:4825668-4825835
Coord A exon
chr2:4825468-4825667
Coord C2 exon
chr2:4825324-4825467
Length
200 bp
Sequences
Splice sites
5' ss Seq
TTCCCGGCC
5' ss Score
-30.28
3' ss Seq
ACGGCTGCACCCATCCTCAGGTA
3' ss Score
7.31
Exon sequences
Seq C1 exon
GGTCCCCGAGAAGGAGACTGTCAGCAGAGCCGTGCTGCCCCTCGCCCGAACCCGCGGGCAGCTGTGGGCCCACTCGGCCGAGCCCCTGCGACAGCCACTGCTCCGGCGCGTCCACGCCAACGCTGAGCTGCGGGATGCTGCCTGTCAGATCTTCATCGATATCCTTTC
Seq A exon
CCGGCCGGCCTGCCCCAACCCCACGCCAAGCCTGTGGGCACGGGCCCCACGGCCAGCCCACCCGAGGGCCAGGCCTCTCAGGGCAGGGGGCTGCTCCGGAGGCAGTGAAGTGCCCCGGCAGGGGCGCGGGATCAGCTCCGGGCCAGACTCAGGATCAGTGGTGAGAGGCGCTGCTCCTTGACGGCTGCACCCATCCTCAG
Seq C2 exon
GTACATGGGTGACTACCCCTCTCGGCAGGCCTGGACCTCCCTGGAGCTCACCGACCAGATCTTCTCATCAGCCCTCCAGGAGGCCGTCCTGCAGGATGAGGTTTATTGCCAGATCCTGAAGCAGCTGACGCACAACACCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078412=MyTH4=PU(34.6=75.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGAAGGAGACTGTCAGCA
R:
CGTCAGCTGCTTCAGGATCTG
Band lengths:
293-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]