MmuINT0104617 @ mm10
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31966206-31966977:-
Coord C1 exon
chr18:31966820-31966977
Coord A exon
chr18:31966360-31966819
Coord C2 exon
chr18:31966206-31966359
Length
460 bp
Sequences
Splice sites
5' ss Seq
TTGATATCC
5' ss Score
-7.71
3' ss Seq
GTTCTCCTTCACAGTCACACCCA
3' ss Score
-8.92
Exon sequences
Seq C1 exon
GGCTCCGGAGAAAGAGACTATCAGCAGGGCTGCGATGCCCATGGCCCGAAGCCGGGGTCATCTCTGGGCCTACTCCCCAGAGCCGCTGCGCCAGCCACTGCTCAAATCTGTCCACGACAAAGCCAAACTGCGGGATGCAGCCTGCCAGATCTTCCTTG
Seq A exon
ATATCCTTCCCACCAACCTACCCTAGCTGCGGGCAAGCCTGCGGGCATACCCACCCGGGTCCCCTGAAGGTCCCACAGCCACCTGGGAGGGGTCAGGGCCCATGTGAGAGAGCATGTGCAGAACCAATGCTCAGCTTCTTGCAAAGAGGCTTGAGGCTAAGTAAAGGGCCTGGAAATGTCCATATGGGGTGAAACCTTACTTAAGGGGCAGTATGAGCCTGGGTCAAAGGTCAGTGGATGACTTGCCTCAGGGGTCATTGTGAGCCTGAATCAGGGTCGAGAGTGCACTGGTCCAGAGGTCAACTGGGGACTTGGTTCAGGGGTCACGGTTTAGCTGGTCAACGAGTGTCTTGGTTCAGGGTTCAGCCTGGGTTCCCCAGGCAGCATTGGGCCACAGTTAAGGCTCTGGTGCACTTTCAGCCTGAGTCTCCCTGGGTGCTGTTCTCCTTCACAGTCACAC
Seq C2 exon
CCATCCTCAAGTACACAGGTGACTACCCTTCCCGCCAGTCCTGGCACAGCCTGGAGCTCACAGACCAGATGTTCTCGTTAGCCCTGCAGGACCCAGCCCTGCAGGATGAGCTGTACTGCCAGATCCTGAAGCAGCTGACCCACAACTCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388:ENSMUST00000134663:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078412=MyTH4=PU(34.6=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCGGAGAAAGAGACTATCA
R:
GATGGAGTTGTGGGTCAGCTG
Band lengths:
310-770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types