DreINT0015011 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28104403-28105943:+
Coord C1 exon
chr6:28104403-28104557
Coord A exon
chr6:28104558-28105789
Coord C2 exon
chr6:28105790-28105943
Length
1232 bp
Sequences
Splice sites
5' ss Seq
CTGATATCC
5' ss Score
-5.88
3' ss Seq
TTGACTAAGTTGGCGTGCACCTA
3' ss Score
-8.73
Exon sequences
Seq C1 exon
GCCGCCCATCAAAGATGTGAACCGTCAGGTGATATCAAAGAATGCAACACCTGAGAGACTTTGGGCGAACTCCAGAGAGCCCATCAGACAACCTCTGCTCAAGAGACTGGTGGGAAATCCAGATTTAAGCCCGCAAGCCTGCCAGGTTTTCACTG
Seq A exon
ATATCCTTTGCCACTTATAACATTTACAGTATGTTGCTATTATGTTAGGGATAAAGTAAATCCAGGAGGTTGTTATTGCAGAGTAAAGCCTGACAGGCTTATGAGCTGATGTACAAGGGCTTTATTCTGCAAACACAGTCATCCTGTATATACGTTATCCTGCTTTTTACTAGGGCTAGACAGAATCTGCTGACAATTTTTGCTATTTCTGCTGAGAATTTTGTAAAAAAAAAAATGTGATTTTAGGAGTGCCATAACTTAAAACCTAAAATATGAAATAAAAAATAATAAATTTTTAGCTTTTATTTAGTGTGTACAATGCAAATCCAATTAGAACCACTTATTTGGTAAATGAAGCAAGTTTCTCATATAATAAATCTCATAAAAGACAAAATATTACTTTACCAGCTGTATTGTAAATAAATCATGTGAACATTTTAATATTACTATTATTATATCATAATAATATTAGTGTAATGAATTCAAAAACTGAATAAATATAAATTTACATACATTTACACAAGTATACAAATGGACTCGATGGGATAAAAATCTGCGGAAATCTCTGCATGAGCAAATTTCATGTGGGCCTACTTATTACACAGCTAATTGCCACAAAGCATGAAAATTAGACAAAATATTGTTTTGAGCTCTAATATTTAGTTATGTCTTTAATAAACGCAAAGCTGACAGAAATGAAAAAAAGCTGAATATAGCTAATGGAGCATACACTAACCTGCACATTATTCAGTTACAAGATGGCACCCAACGATCAAAAACATAAATCTGACAGAAACAAAGCTAGTTGAATTGAGCATAGTGCAACCTACACAATGTTCCTTCACAAGACGGTGACAAACAGCCTAAAACAGTGGTGTGAGACAAGCAGATGCATATGAATGTGGATATAAGAATATGGATGTGAACGTAGACCTATTCACTGATGGTTAAGATGATTCGAAGTTCCAGGATGATCCTGTGTTGTTCAGCAGTTGTTATCTGGAAATAACATACCGTGGAATGTTGCAACTGACCAATAAGAATATTCCAGACAGACATCTAATAAGTATTGTTATCATATATTTAATCATCCTTTATTGTCATAATAGTGGGTTATCCCTTATTTTTAACTGATACATATCCAAATGACTTATAAGTGAGACTTGCCAGGGAAACTGGTTATTGGATGCAACCCCAGACAGTGCGGATTCCTTGACTAAGTTGGCGTGCAC
Seq C2 exon
CTATTTTGAAGTATATGGGTGATTATCCCACCAGACAGGTTCAGAGCCCTCTGGAGCTCACAGATCAGATCTTTGGCCCACCTACACAAAATGAGGAGCTCCGAGATGAGATCTACTGCCAGATCATGAAGCAAATGACCAGCAATAACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.192
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(10.9=100)
A:
NA
C2:
PF0037313=FERM_M=FE(10.7=100),PF0078412=MyTH4=PU(34.6=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCCCATCAAAGATGTGAA
R:
GGTTGTTATTGCTGGTCATTTGCT
Band lengths:
308-1540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]