RnoINT0097442 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24753331-24754083:-
Coord C1 exon
chr18:24753926-24754083
Coord A exon
chr18:24753485-24753925
Coord C2 exon
chr18:24753331-24753484
Length
441 bp
Sequences
Splice sites
5' ss Seq
TTGATATCC
5' ss Score
-7.71
3' ss Seq
GTTCTCCTTCACGGCCACACCCA
3' ss Score
-3.08
Exon sequences
Seq C1 exon
GGCTCCAGAGAAAGAGACCATCAGCAGGGCGGCGATGCCCATGGCCCGAAGCCGAGGCCATCTATGGGCCTACTCTCCCGAGCCGCTGCGCCAGCCACTGCTCAAATCTGTCCACGACAAAGCCAAGCTTCGAGATTCAGCCTGCCAGATCTTCCTTG
Seq A exon
ATATCCTTCCCACCAGCCTACCCTAGCTGCAGGCAAGCCAGCGGGCATACCCTGCAGGCCCCACAGCCACCTATGAGGAGTCAGGCCCCACGTGCGTTGCAGAGCCAATACTCAGCTCCTTGCAAGGATGCTTGAGGCTCAGTAAAGGGCCTAGAGAAAATGTCTGTGTGGGGCGAAGCCCTGCTCAGGGGTCAGTATGAGCCTGGGTCAAAGGTCAGTGGGGGGGGTGTCTTGATTCAGGGGTCATTGAGCTCCCGAATCCGTGTATGGAGTATGCACTGGTCTAAAGGTCAATTTGGGACTTGGTTCAGGGATCATGGTTTGGGGGGTCAGCGGGTTGATTCAGGTTGATTCAGGGTTCAACCTGGGCTCCCGGACTGCACTGGGCTGCCAGGGTTCAGCCTGAGGCTTGCTGGGTACTGTTCTCCTTCACGGCCACAC
Seq C2 exon
CCATCCTCAAGTACACAGGCGACTACCCATCCCGGCAGTCCTGGCACAGCCTGGAGCTCACAGACCAGATGTTCTCGCTAGCCCTGAAGGAGCCAGCCCTTCAGGACGAGCTCTACTGCCAAATCCTGAAGCAGTTGACCCACAACTCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078412=MyTH4=PU(34.6=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCAGAGAAAGAGACCAT
R:
CTGATGGAGTTGTGGGTCAA
Band lengths:
312-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]