GgaINT0031426 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:868401-869204:+
Coord C1 exon
chr9:868401-868558
Coord A exon
chr9:868559-869041
Coord C2 exon
chr9:869042-869204
Length
483 bp
Sequences
Splice sites
5' ss Seq
TTGATATCC
5' ss Score
-7.71
3' ss Seq
CCTGCTTTTGTCCTTAACAGCAC
3' ss Score
10.54
Exon sequences
Seq C1 exon
AACTCCTGAGAAGGAATCCATCAGCAAAGCTGTTCTCCAGAAATCTCGTGGGCACAGTCAGCTGTGGGCACACTCTAAGGATCCCTTAAAACAGCCCTTGCTGAAGGCAGCATGCACAGACCCTGATGTTCGGGACGTGGCTTGTCAGGCCTTCATTG
Seq A exon
ATATCCTTTTACTTTTCTCTTTGGGACCTGAGAACTCTCGGGGGAAAGAAGAGCTGCGTCCATGGAACACCTCCACTGAGATAATACCACGTCCACATTACTGGGGGCACACTTACATTAAGCAGAGGAGGAGGAGTGGGGGGTTTATCAGCTCTGCATGACTTGGCGTTGTTTCCCTTCTCTCAGAGAAAAGAGTCCTATTCCCTCCCAGCGCTCCACAACTTGTGATGACCCACTTAGCTGAGAACATGGCTGCAGGAGAGAGCGGGATTTATTTCATATGCCCAGAACAAACAGTTAATACAGCTGAAGTCATAGAAAAGCAGCAACTGCTATAAAGGGAAAGGGAATGAGCAGAGAATCAGTTCCAGACCTTCGTCTTAGTATTTTCCCCTCAGACCCCAACAGAGTGCTTTAACACGTTAGGATCCAACTGATACCTCCCATTGACCTTTCAAATTGTCCTGCTTTTGTCCTTAACAG
Seq C2 exon
CACAGTCACCCATCATGAAATTCATGGGGGACTACCCCTCAAAGCAGACACACTCCTCCGTGGAAGTCACTGACCAGATATTTGTGGCAGCTATCAAGGAAGAAGTCCTGCGGGACGAAATTTACTGTCAGATCATGAAGCAACTAACTGACAACAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078412=MyTH4=PU(34.6=67.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGAGAAGGAATCCATCAGC
R:
TGTTCCTGTTGTCAGTTAGTTGCT
Band lengths:
318-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]