BtaINT0098345 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4822686-4823073:-
Coord C1 exon
chr2:4822960-4823073
Coord A exon
chr2:4822774-4822959
Coord C2 exon
chr2:4822686-4822773
Length
186 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
CTCCTCTCCACCTGCCCCAGGTC
3' ss Score
7.38
Exon sequences
Seq C1 exon
ATGCTGGAGGTGGGTGCCAACACGCGGGTGCGGGACGCCTGTGACAGCATCGCCGCCCGGCTGCAGCTTGCCTCCTGGGAGGGCTGCAGCCTTTTCATCAAGATCGCAGACAAG
Seq A exon
GTGTGTGGCCCGCAGGCCAGGGGGCGGGAAGGAAGGCGGTTAAGGCGGGTGGGGGTCTCCCACCAGCACTGGGCCAGCCCCGCCGAGGTTCACAGGCACACAGGCGAGAGGGGTCACAGAGCCCCAGGGTGACACCTGGCCTCCTGCACACCTGCCTGCCTGTACCCTCCTCTCCACCTGCCCCAG
Seq C2 exon
GTCATCAGCCAGAAGGAGGGAGACTTCTTCTTTGACTCCTTGCGGCAAGTGTCCGACTGGGTAAAGAAGAACAAGCCCCAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGGAGGTGGGTGCC
R:
CTTCCTTCTGGGGCTTGTTCT
Band lengths:
202-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]