RnoINT0097447 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24749642-24750121:-
Coord C1 exon
chr18:24750008-24750121
Coord A exon
chr18:24749730-24750007
Coord C2 exon
chr18:24749642-24749729
Length
278 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTTTTCCCTCCTCCCCAAGGTC
3' ss Score
9.91
Exon sequences
Seq C1 exon
ACCTTGGAGGTGAGCAGCAGTAGCCGGGTGCGAGACCTATGTGAGGGCATCGCCACTAGGCTCCAGCTGGCCTCCTGGGATGGCTGCAGCCTCTTCATCAAGATCACAGACAAG
Seq A exon
GTGAGCAACTTGGTAGGCCGAGGAGTGGACTGAGCAAGATGCTTTGGGCTGAGGAGGCCTCCCCTGACCAGCAGACCTCAGCCTACCCAGAACACTGTGCTGGCCAGGTCCCTCAGTGCTCAGGGCTATAGGCACGAGCAGGGCGGAGCTTTGGAGTCCCACAACCTGCTTGTTAATCTCCATGAGCCTCCAGCCCACTGGCCCGAAGACTCAGTTTCTGGATCCTTGGAGGATCCATCCTGGAAACTACCTCACCTGCCTTTTCCCTCCTCCCCAAG
Seq C2 exon
GTCATCAGCCTGAAGGAAGGAGACTTCTTTTTTGACAGCTTGAGGCAGGTATCTGACTGGGTGAAGAAGAACAGGCCCCAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.4=100)
A:
NA
C2:
PF093795=FERM_N=FE(30.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAGGTGAGCAGCAGTAG
R:
TCTTTCTGGGGCCTGTTCTTC
Band lengths:
198-476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]