GgaINT0031430 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:873846-874916:+
Coord C1 exon
chr9:873846-873959
Coord A exon
chr9:873960-874828
Coord C2 exon
chr9:874829-874916
Length
869 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
CATCGCTTGGCTGCTTCCAGGTG
3' ss Score
8.11
Exon sequences
Seq C1 exon
ACATTTGATGTGGGAACAAACACCAAAAACCGGACTCTATGTCAGAACATCGCTTCCAAACTGCAGCTGAGCTCTTGGGAAGGTTTCAGCCTCTTTGTCAAGATTGCAGACAAG
Seq A exon
GTAACGTCTCAACTACAGCAGGGTTGCCAGACTGCCTCTCTGGCTTCCTTCCCATACAACCTAAGCAACAATATTTGAAAACAGGCAACAAAGCAGGTCATTACTGCTGCTGTTTTCTGAGGGGCTACAGCCTAGACAAAGCTGGAGGGAGATACAGAGTTTCTATCAGTCTGTTGGTACACAAGCAGTACTGAAAGCTGACAGGACAAAGGCTTTCTTGCTGCGCTGCTAGAGTGGTAGCAAACTGCGTGTTGCACGCTGCTAGATTCAGCCTGTTTGCTCTCAGGCTTTGCCCAGGATATGTGCTGCATACCTACAGTACTCACTAGCATTAGGGAAAGCTGTGGCTGACCATTAGGGAAAGCTGTGTGCTCTCTCTCTAGTCTCTCAAAACTTGACTTGTCTGAGCTGAAGCTCAGTTTGGCTGCCTTGCTGAGATGACCATTCTCTCTGGAACTGCATGAGGATTGTGACCAAGGGAAAAGCAGTACTGAATACAAGCAGATGTTCTGCTGTGGTCCTGAGAAGAGAAACCCAGTTATCTTACTCAATCTTACTACAGTGTTTCCCTATGAGATAACTAGGAATAAGGTAGGCATCTTCAGCTTGCTTTCAGTAAGGAAGTTAGAAAGAAAAAAGCAATAGAGAATGGAATAACTTCCCACTCCATTTGAAACAGAAATCATGTAAGCACTTCTCCTTTTCCCTTTGTACCCCCTTGCCTCTGTCTTTCCTGCCATAATTATGCTTTCTTGCTCTAGACAGGGAAAGCAAATTCAGCTTTGTATTTTGGATATGTTGGCACAGGTAGTATTTTAAATGCTCTACTAATCCCTCCTTTCTCCTCTTCATCGCTTGGCTGCTTCCAG
Seq C2 exon
GTGATCAGTCAGAATGAAGCAGACTATTTCTTTGACTCACTGAGGCAGCTGACAGATTGGACCAAGAGGAACAAACCAGTGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.4=100)
A:
NA
C2:
PF093795=FERM_N=FE(30.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTTGATGTGGGAACAAACACC
R:
TTTCACTGGTTTGTTCCTCTTGGT
Band lengths:
198-1067
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]