DreINT0101052 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3174893-3177481:+
Coord C1 exon
chr18:3174893-3175006
Coord A exon
chr18:3175007-3177393
Coord C2 exon
chr18:3177394-3177481
Length
2387 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TGCTCTGGTGTGTGTTGTAGGTG
3' ss Score
10.91
Exon sequences
Seq C1 exon
GCATTTGAGGTGGAGTCCAGCACAAAGGCTAAAGATTTCTGTCTGAACATCTCCAGCAGACTCTTACTCAAAACACCAGAAGGCTTTAGTCTGTTTGTCAAGATCTCTGACAAG
Seq A exon
GTAAACACATTACTCATTCAGCACCTACGGTCTCAAACTCAATTCCTAGAGGGCCACAGCACTGCACAGCTTAACTCCAAATACCTCCAACTCACACTTGCTTAACAGTCTTTTGTAGTCTTGAACACCTGCATTAGTTGGATCAGCTGTGTTTGATTAGGGTTGGAGCAAAACTGTGCAGAGCTGCGACCCTCCAGGATTCCAATTTGAGACCTTTGAGCTACAGGTTTTTGACAGTAGCACACCATTGATGTTTTGTTGGATCTTTCTTTTTCTGTTGGATCAGAATACATGCAACCTGTTTTTAATCATTAACTGCAATATGTAGAGTTAGAACAAGGGCTGCACAGTATACCCAAATATTATCGTGCTTGCAATAATATTGCAATAATATGAAGTATCTATACCACAAAGAGGTGCAATAAATTACATTGATTGTATGTGTTAAGGGTGGCATGGTGGCTTAGTGGTTAGCACTGTCACCTCACAGAAAAAAGTTCATTGGTTCGAGTCCCGGCTGGGTCAGTTGGAGTTTGCATGTTCTCCCCGTGTTGACATGGGTTTCCTCCGGGTGCTCCGTTTTCCCCCACTGTCCAAACACATGCTCTTTAGATGAACTGAATAATTGAAATTGTCCGTAGTGTATGAGTGTGTGTGAATGAGTGTATGGGTGTTTCCCAGTAATGGGTTGCAGCTGGAAGGGCATCCGCTGCATAATTACGCTGTGGCGACCTCTGATAAATAAGGGACTAAGCCAAGGGAAAATGAATAAATCTGTTAAAAAATGACAACAGCCATTAAGAGACAAAATATGTAATTGGTTTTCATTCAATCAGTGTTTTAAAGACTAAGGGCTCTATCGTACACCCGGCGCAATGTGGCGCAAGGCATTTGTTGCTTGCTAGTTTCGCTAGCTTGCTAGTTTCGCTTAGTTCTGGCGCGTTGCTATTTTGAGGAACTTAAATAGACTGTTCAATAGACCAAAACAAAGCTGGTATAAAGTCCAATGCAGAGTGCGTTAGTTATGCGCCTCGCTTACACAGTGCTTAATACACACAGGATATACAGCAATACACAAATATCTTTACATATGAAAAATAATTAAAGGATTAAAATATTACAAAAATGATTATTTTCTAGCCTACATAAATATAAAAACCACTGCCTTCATGCCTTCTTCCTCTTGGGGCTTTTTCAGTTTATTCATAACAATTTGCTTTTGTATAATGTTATTATTATTAGCATTATTATTTATTATATGCACATTTATATTTGTTTTATTAAAAACAAGCTTAGATTTGCCCACCTGTCAGGTTTTAGACCATATGTGGCACAGCATGTGTATTTGGATATAACTCAGTTGTTTGAGCACACTTTTTTATTATTGTTTATTTATTCGTTTGCTGGAAATTAGAACTGAATTTAGAAATAGTTTTGAAACAAATCTTTGCGCTTAACAAACTAATTTTTTATGCTAGTTGTCTGTGAGTCCAACACGTTTGAGAGGGTGCTCGCTGCAGAGCCATTTGAGGAGAGGTGAGCTCCAGAGAGGGGGAGCATGAGCTGTCGCTCCTCCTCCTGTAAGCTGTTTTAATGCGTACACCAACCCCACCCCTAACCCTACCCCCAGTGACATCACTCGTAGAAGAAGTGCAAAAAAGGTGGAGCTCAAGCTTAAGCTCCCCCTCTCTGGAGCTCAGCTCTCCTCAAATGGCTCTGCAGCGAGCACCACTTGACACGTTTCCCTATCCATGAGAGTGAAAGTGAAAGTTAATAATGAGGAGGTTCATCTCTCATTCTCGCGCAGCAGATGCTCTGTTTAACTTTTTTCTCACTAGTGAAGCACTCAGTTTTTCCATTACAGAGTCCGCCATGTAAATAGCAAATGCGCTATGTCGTGACGCAACTAGCTCTTAAAGGGAATGGGAGATGAGACTCTGATTGGTTTATTCTCAAAACACACCTATAACTCATTAAGAAAATAAGCTCAACCCTGTTAGACCATGCGCAAGCGGATTTTTCCATCCTTAAAATAGCTAAAGTGGATTCTGACACGCCCTTAATGCTTTTGCGCCCTGCGCTTTGCACTTTGCGCCTGGATCGTTAAAATAGAGCCCAAATGTTTGCACCTTGATATGTTTTTTTTAATTTTTTAGCCTGAATTAATTTCATTGGATCAGAAAGATATTTAATACCAGTTTATTTTAGTATGGTCGTTACATGATTAAAAAAAAAAAAAACACAATGTTATATCACAAGAAATATTATTATTGCAATACTTGACAATATTGCGTGTCGCATAATTTCCCAGTATTGTGTAGCCCAGTATGCAGTTCTCATTAAAGCATATCTGAAAGGTGTAGTTTCTGCTCTGGTGTGTGTTGTAG
Seq C2 exon
GTGATCAGTGTGCCTGAGGGGGATTTCTTCTTCGACTTTGTCCGCCATTTGACCGATTGGATAAAGAAAGCAAGACCTGCTAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.8=100)
A:
NA
C2:
PF093795=FERM_N=FE(31.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]