MmuINT0104576 @ mm10
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98054874-98055904:-
Coord C1 exon
chr7:98055791-98055904
Coord A exon
chr7:98054962-98055790
Coord C2 exon
chr7:98054874-98054961
Length
829 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TGTGATGACTGCGTCCCTAGGTC
3' ss Score
8.24
Exon sequences
Seq C1 exon
GCTTTTGAGGTGGAGTCCAGCACCAAGGCCAAGGACTTCTGCCAGAACATCGCCAGCCGGCTGCTGCTCAAGTCTTCCGAGGGATTCAGCCTTTTTGTCAAAATCGCAGATAAG
Seq A exon
GTGGGTCTGCCCATCTTTTGGAGACTTGCTGGGGCCCCAGGAACGTGGAGTGGGTAAGAGGAAAGAGGCACCTGCATGGAGCATCTCTCTGTTCCTCTCACACAGCACAAATGTCCTCGGTCCCCTGGAGCATGGTACATGGCAGCAAAGCTTTTCTGAGAGTCACATGCCCAGGTGCCCTGTGTCCTGCAGTCACAGGGCTCATTGTCTTTGTCCCCTCAGAAAATTCACCCTTGAAGTATCCTTCAGAGGGTAGAATGCTTATTACTGCTTTATCAGAGAGGTTAAGTAACTTATCCATGGTCACACAGCAGGGACCCAGATCCAGGCGTGCCGTCCCTAAAGGTCTCACTAGTCAGCTGTGATGTCTCCTCAAAGGGAAGGCTTCCTAGAGCATCCAGAAGAACTGGATGTTCCCTTCGACTGATCATAGACAGCTCCGTGTCTATTCTACCTCACTTCGTGACTGTCACTGTGTCAAACATGAGGACCCAAAGACAATGTCTCCGAGGTCCTGGGTCTGGAGGATCTGTGTCAGAGCTGGACACAGATGCCAGAAGTCAGCTGAGGCAGACTGGTCTTGTTCTCAGCTGTGTTGCATTGGGCCTGTGCAGGTCTTGGTGTGCCAGGGACTGGGTGGGATGATGCCCCTCTCGGCAGGAGCTGGTGTTCCCGAGATGCTAACGAGGCACCAGTGGTGTGGGTAGGACCAACACAGAACCCCTCTGGCTGGGGGTGGAGCCTTCCTATAGAAGCAGCTGACAGCAATGTTGGTGGGAAAATCAGAACCAAACGAAATGGCCCAAAGCTGTGATGACTGCGTCCCTAG
Seq C2 exon
GTCATCAGCGTCCCAGAGAATGATTTCTTCTTTGACTTTGTCCGACACCTGACAGACTGGATAAAGAAAGCACGGCCCATCAAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761:ENSMUST00000107128:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.4=100)
A:
NA
C2:
PF093795=FERM_N=FE(30.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTGAGGTGGAGTCCAG
R:
CTTGATGGGCCGTGCTTTCTT
Band lengths:
198-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types