BtaINT0098296 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57408177-57409457:+
Coord C1 exon
chr15:57408177-57408290
Coord A exon
chr15:57408291-57409369
Coord C2 exon
chr15:57409370-57409457
Length
1079 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TAGAACGACCGTGTCCCTAGGTC
3' ss Score
6.44
Exon sequences
Seq C1 exon
GCCTTTGAGGTGGAGTCCAGCACCAAGGCCAAGGACTTCTGCCAGAATATCGCCGCCCGGCTGCTCCTCAAGTCCTCCGAGGGATTCAGCCTCTTTGTCAAAATTGTAGATAAG
Seq A exon
GTGGGTCATGGGTGGTCATTGGTTGCTAATCTACCTGCTGTTGGGCTGTCTACTGGGAAATTTGCTGGGCCTCTGGGAGCTTATGGGACGGTGGGGGTAGGGAGAGAGACAGAAGGAAGGATGGGGCAAGAGAGGAAGAGGCACTCTTGCACACGGCCTCTGATTCTGCCTCCTCCTTACATCCCTGCAGTGGCCCCTTCCATGCAGCCGCTGTCCCTATATCTCTCTCCTCTGAGCCATTGCACAGCCTGGCTACAGCTCTCTTGGGATCCACATGGCACTCTGGGTTCTGGACACACTAGGCTCCTCACCCTGCCCCCCAACACATGTACTTTCCAGATTTGATTTGACTGGTCCCTCAGCTGCCAGGCTCTCAGTTCACCTCTGAAAAAGCCCTTGAAGAGAGAGGGTGACTATCCCCACTAATAGATCACAAGTCCCTGGGCTCAGAAAGGTTAAGTAACTTATCCCAGATCACACAGCAGGGACTCAGATCCAGGTAGGTGTGGCTCTGAAGCACAGGGCCCTGCCTCCGCCCCTCATTGACTTCCATGGACATAAATGTGGGGGGACAAAGGTCCAGCTCTAAAGCCCTTCCCTTGGGGGCTTCCCTGACCCTTGTACAGGTCAGGTGCTTCCCCTTGTTGCTCACCCAGAGTTCTGTGTGAATTCATGTCTGTCTCCTTACTAGTCTGACCCTGTACCAGACACTGTGACCCGAAGTGATCGGGTGAGGTCCTGGACCTGGGCGGGAGGGACTTAGAGTCTGTGAGTGGCTCAGGAAATGGATGCCAGAGAATGTCCAAAGCAGGGACTGGGCCGCCATCTCAGCCTTTTTTTCCCAGGGTCCTAGGGCAGTGATCAGTGACTCTTTGCTGAATGAGTGGAGTCACTGTCACTGGCCAGACACTCAGCAGGCAAAATTGGGGCAAGATGGGGCTGATCCACAGACACCCACCCTGGCTGCAAGCAGGAATCTTTCTGGAGAAGGGGTTGTCGGGGAGGCCTTGGGTGGGAAAATCAGAGAACTCAGTATTGCTCAAATTAAAATGAGTGGACTAGAACGACCGTGTCCCTAG
Seq C2 exon
GTCATCAGCGTCCCTGAGAATGACTTCTTCTTCGACTTTGTACGACATCTGACGGACTGGATAAAGAAAGCCCGGCCTGTCAGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.4=100)
A:
NA
C2:
PF093795=FERM_N=FE(30.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGAGGTGGAGTCCAG
R:
CATCCCTGACAGGCCGGG
Band lengths:
202-1281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development