RnoINT0097401 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163005992-163006911:-
Coord C1 exon
chr1:163006798-163006911
Coord A exon
chr1:163006080-163006797
Coord C2 exon
chr1:163005992-163006079
Length
718 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ATGGCTTGCTTCATCCCTAGGTC
3' ss Score
9.76
Exon sequences
Seq C1 exon
GCTTTTGAGGTAGAGTCCAGCACCAAGGCCAAGGACTTCTGCCAGAACATCGCCAGCCGGCTGCTCCTCAAGTCTTCTGAGGGATTCAGCCTTTTTGTCAAAATCGCAGATAAG
Seq A exon
GTGGGTCCGCACATCTTTTGGAGACTTGCTGGGGCCCCAGGAATGTGTAGTGGATTAAGAGGAGAGAGGCGCCTGCATGGAGCATCTGTCTGCCCCCCTCACATGGCACAGCTGTCCCCTGTCCCCTGGAGCACGGCACAGGGCAGCAAAGCTCTTCGGAGAGTCGCCTGCTCAGGTACCCTGTGCTCTGCAGTCACATGGCTCAGAAAATCCACCCTTGAGGTAACCTTCAGAGGGCAGACTGCTTATTACTGCTTCATCAGAGAGGTTAAGTAACTCATCCATAGTCACACAGCAGGGATCCAGGTGTACCATCCCTAAAGGTCTCACTAGGCAGCCATAATGTCTCCACAAAAGGACAGCTTCCTAGAGCATCCTGAGAAACTGATCACCAAGAGCTTCATGTACTCTCTACCTCAACTGTGTCAAACATGAAGGCCCAAAGACAAAGTCTCCGAGGTCCTGGATCTGGAGGATCTGTGTCAGAGCCTGTGGGAGGATCCGGACGAGATGTCAGAAGTCAGCGAGGCAGACTGGCCTTGTTCTTGGCTATGCTATATTAGACCTGTGCAGTTTTCCGTGTGCCAGGGACTGGGTGGGATGAGGCCATTGCAGGCAGGAGACCGATGTTCCTGAGACAATAGTGACAGGAATGTCAGTGGGAAAATCAGAATCAAAGCAAATGGCCCAAAGCTGCAATGGCTTGCTTCATCCCTAG
Seq C2 exon
GTCATCAGCGTCCCTGAGAATGACTTCTTCTTTGACTTTGTTCGACACCTGACAGACTGGATAAAGAAGGCACGGCCCATCAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.4=100)
A:
NA
C2:
PF093795=FERM_N=FE(30.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGTAGAGTCCAGCACCA
R:
CATCCTTGATGGGCCGTGC
Band lengths:
198-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]