GgaINT0104546 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192361056-192362317:-
Coord C1 exon
chr1:192362204-192362317
Coord A exon
chr1:192361144-192362203
Coord C2 exon
chr1:192361056-192361143
Length
1060 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATCATGTACTGTGCCCCCAGGTC
3' ss Score
9.15
Exon sequences
Seq C1 exon
GCATTTGAGGTGGAGTCTAGCACAAAAGCAAAGGATTTCTGCCAGAACATCTCCAACAGACTGCTCCTAAAGTCTTCTGAAGGCTTCAGCCTCTTTGTCAAGATCTCTGACAAG
Seq A exon
GTGAGCGACCCACACTCACCTTGTGGTATTGCCAAAGCACTCAGTGCTTCATTTTCAGAGACTCAGTAGGTGTGCACTGCAGGAGCCAGAGCTATAAAACAGGCTGCCCAGAGATGTGGTTTTGGAAGTTGGATGTGGTGTTGTCCTTGGATACATTCAAGGTCAGGCTGGACCAGGCTCTGAGCAATCTGATATAGCTTGTGCATGTCCCTGTTCATTGCAGGAGGGTTGGTCTAGATGACCTTTAATGGTCTCATCCAACTCTATAGCCCCACAAATCAGATTAATTCCTCTGCAAGCAGTGCAGCATTTCTAAGTCACATCTAGCCTGCTACAGGTGAGATTTCAGTATTATAGCCACGGTTACAGCAATCATCCTAAAAGGGAAAGGTATCCTGTGTTGAGAACAGGCAGCCTTAATACCTGATGATAACACTGCAGTGTCCTTGATGATTTAGGGACCCAACCAGTACCATTCTATGTGCAGGATCTCACAGAGGAAAGAGGTAGAAAACCCAAGCCTGTTGTTGAGGTGAGTTCATAAAAGATTAAATTAGGTGTCAGGAGGAAATTTTTCACATAGAGGGCAGTGGAGGCACTGGCACAGGCTGCTCAGAGAGCTGTGGTGCCCCATCCCTTGAGGTGCTCAAGGCCAGGTTGGATGGGACCCTGGGCAGCCTGAGCTGGTGGCAGGCAACCAGCCCACAGCAGAGGGTTCAAACTAGACAAACTTTAAAGTCCTTCCCAACTCAACTCTATGATTCTGTGATAAAGGACTAAGAAAAATGTGCAAGCATAGAGCTGCCTTGGGCAACTGGAACTAATGTGTAGGGATAGTCATCATGGAGAGAAATTAATTGCTCCAGGAAAGCAGGAAGCCCCAATAAGGAGTAATGGGGGAAATTAGAGTGGTGACTTTCTGACATCAACAACCTGTAGTCCAGAAGTCTAACTGAGACAAAGCAGTGTGCAGCAACCACAGGAGGTGAGGCAGTGCACAGCCCTACCTGTGACCTCTTACTGCTTACTTGGTCTTCATAATCATGTACTGTGCCCCCAG
Seq C2 exon
GTCATAAGTGTGCCCGAGGGAGATTTCTTCTTTGACTTTGTGAGACACCTGACGGACTGGATAAAGAAAGCAAGACCAGCAAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.8=100)
A:
NA
C2:
PF093795=FERM_N=FE(31.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGAGGTGGAGTCTAGCA
R:
TCTTTTGCTGGTCTTGCTTTCT
Band lengths:
200-1260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]