DreINT0015016 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28115756-28116636:+
Coord C1 exon
chr6:28115756-28115869
Coord A exon
chr6:28115870-28116548
Coord C2 exon
chr6:28116549-28116636
Length
679 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TGCCATTTTCTATTTGTCAGGTT
3' ss Score
7.73
Exon sequences
Seq C1 exon
ATATTTGAGGTGGCAACCAATACTAAGATCAGAGACCTGGTCCGGACCATTGCTAATAAACTCATGCTGTCCACAGCTGAAGGTTTCAGCCTCTTCATGAAAACTCCTGATAAG
Seq A exon
GTTTGTTCCTAGTGTACCATGATTTATATTTAACAGCCAGGACTGTGTGCTTCTATTAATGAACAGTTTCTGGAATATTGTGGAAAAAGGGGTATTCCAGACATTGAAAGTCTGGGAAATGTGTATTATTTGTCTATAATTCATTTTATATTTGTATTATGAATATTATTCTGATCTCAAGAATCATTGGTCTCAATTGACCTCTTAACCATTTAAAAAAATCCTATTTGATGCACAAATTACTTAAAGTAATCAGGGTAAACTAAATGGTTAAAATCTCTTTAACAATACTATTAGAAAAATCATGTTTTATTATACTAATAAAAATTATACTCATTTTTTACAAAGATGCAAATTGCTTAAAACTGGAAAAATGCCTAATAGCATGTAGTGGCTTTTGTAGATGCACGACTGCTCATTTGTAAGACAACTCAGACATTGTTGCACATTGGATAAGCGCTTTATAAACCAAACATAATGTGTCCTGAAAGGCCAAAATGTGCCAGAAATCTAATCTTAATTATATTGCAAGCTCATCTAAATTTTGTGTCATTTGCTTGGTTTTGTGTTAAATTCAGTATCACAGAATAGCAAAATTTAGGAAGGACTCCTCAAAAATTCTTATTTTTATTACCCTAAATGATCATTAATAACTGTTCTGCCATTTTCTATTTGTCAG
Seq C2 exon
GTTCTGAGTTTGAATGAAACAGACTACTTCTTTGACAGCCTCAGACAGATTACTGATTGGTCCAAAAGAGCAAAGAGAGTGAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(38.9=100)
A:
NA
C2:
PF093795=FERM_N=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCAACCAATACTAAGATCAGA
R:
TGATTCACTCTCTTTGCTCTTTTGGA
Band lengths:
192-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]