BtaINT0098350 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4820819-4821201:-
Coord C1 exon
chr2:4821085-4821201
Coord A exon
chr2:4820903-4821084
Coord C2 exon
chr2:4820819-4820902
Length
182 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GTGACACCCTCCCTCCACAGCAA
3' ss Score
9.08
Exon sequences
Seq C1 exon
AACATCCTCCTGGCCTGCAACAAGCACAAGGACAAGACGGTGGAGGAGGCCAAGGTGGCCTTCCTGAAGTGGATCTGCCGGTGGCCCACCTTTGGGTCTGCCTTCTTTGAGGTGAAG
Seq A exon
GTAGGTGGCACCCCAGACCCGCTGTCCTGGCCAAGCAGGCCCCACACAGCTCTGGCCCCGGCAGCCTGAGCTTCTCCTGCAGACAGGCCACAGGCAGGGCCACAGCCAGGTCTGGGAGGGCACTTATGCGTGGCTGCGTCTCAGGGAGGGGCTGTGATCCCCGTGACACCCTCCCTCCACAG
Seq C2 exon
CAAACCTCGGAGCCCTCCCACCCGGACATCATCCTCATCGCCATCAACCGGCACGGGGTCCTGCTCATCCACCCCAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(30.4=89.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCCTGGCCTGCAACAAG
R:
CTTGGTCTTGGGGTGGATGAG
Band lengths:
198-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]