GgaINT0031434 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:877430-878382:+
Coord C1 exon
chr9:877430-877546
Coord A exon
chr9:877547-878298
Coord C2 exon
chr9:878299-878382
Length
752 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TTTCACCTTTTCTGTTCTAGCAA
3' ss Score
11.09
Exon sequences
Seq C1 exon
AGCATTACTGCAGCATACAGCAAACATGAAGGAAAAACTGTGGATGAGGCCAAGATTGCCTTCTTGAAAATCATATACCGGTGGCCAACATTTGGATCAGCCTTCTTTGAGGTGAAG
Seq A exon
GTAGGTGTAAAGGCCTGGATGTCTGGCTTTGGTAGCAGACCATCACTAGGGGATATGGACTAGCTATAGTTCCCTACCTATGTAATAATACATTAGTTAACTGGCTTCCCATCATGCCCTAAGGAGAACACAATATCTTCACAGTGGAGAGATGAGTTCTTTATCCCAGTTACTGGTTCCTGGAAGGGGCAAAACTGCCAAACACAGGAGTACACTGCAAAGAAATGACACTGCTACGTTCACTGTTGAGGAAGTATCAGTTGTAAAACACAGCAGTAGCACAAACAGTATTAAAACCAGCTGTAATGCCTAATATTATGACTATGTAGCAGATGGGGGGCTTTTAGTTATAGGGTTACTGTCCTGTCGCTGTTCTCCACAACACAAGGCTGCTATCTCTGGAGACTCTCTCCTCAGAGCAGAACTGTACTAAACGTCACATTTGGAGTGGGTACCTGCAGGGAACATTCTCTCCTTGTTGCTTTTTAATTTCTCCCCACCAGGTTCTTAGAAATAACCTAGTCTGCAACCAACCACTAAGCCCACTATCAGTCTGGGAAGTAACAAACCTCATTCTGCTTTATGTAGCAGTGAGCAAGTCATCGTTGTTTAGCCAAAAACTCATCGTTAGCAACAGTTTCATAATACTGAAGAGCTTTAGTTTCCATTAGTTATTTGGTAAAGAGAACAAGAAGCACTAGGCACCGGTTGGTGTATCACACCTAATGGTTTTTTCACCTTTTCTGTTCTAG
Seq C2 exon
CAAACCTCTGAGCCAAATTTCCCAGAGATTGTGCTGATTGCAATCAACAAGCAAGGAGTCTCAGTGATACATCAGAAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(31.2=89.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATACAGCAAACATGAAGGAA
R:
TCTTCTGATGTATCACTGAGACTCCT
Band lengths:
184-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]