RnoINT0097451 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24747504-24748443:-
Coord C1 exon
chr18:24748327-24748443
Coord A exon
chr18:24747588-24748326
Coord C2 exon
chr18:24747504-24747587
Length
739 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CTGAGCCTCTCTCTCTGCAGCAA
3' ss Score
10.45
Exon sequences
Seq C1 exon
AGCCTCCTTCTGGAATGTGACAAACACAAGAATAAGTCAGTGGCCGAGGCCAAGGTGGAATTCCTGAAGCGGATCTACCGATGGCCTACCTTTGGATCTGCCTTCTTTGAGGTGAAG
Seq A exon
GTAGGCCTTAATCCATGCCAGCCTCTGCCCCAACACAGGCCCCGTTTAGGTGAGTCCTCAATGCATATCGGTAGACAGGAGTGTGTGCTCTAAATGTAACCCTGTGGAACACCTAAAAAGTGGCCACTTGGGGGCCAGCGAGGAGATGTCTCGGTTGGCCAAGCACCTGCGGACCTGAGTCTGATCCTCGGAACTCATGCTGAAACACAGAGTAACAAAAGGCAGCACATGCTGCCGTCTGCTAGTAACCCCAGTGCTGGGGGGATGGAGAAAGGGATCCCTAAGCTTTGCTGGCCAGCCGACCTAGCCTATTTGGTGAGTGCCAGGCCAGTGAGAGACATTGTGTCAAAAATACTCACATACACACATACACATGGCCAGTGACATGGCTCTGCAGGCTACAGCCCTTGCCACCCAAGCCTGATGACCTGAGTTCAATCTCTAGGGCCTGCGTGGTGGAAAGAGGGAAATGACTCCTGCAATTGTCTGCTGACCTCCATTCACACACCATAGCACACACCACATGCACACACGCAGACAAATAAAACATGTTTAAGAAACAAAGGTGGTTGGTACCCAAGACTGACCTCTGACCTCCATACATGAGTGCACATACCACACGCGTGTGCATGCTTACCCCCACACACATTTCCCTGTACACACCTGGGCACACATACGGATAGGAAGTGGTCACTGACCCCCACATCCCTCTATGATAACTGAGCCTCTCTCTCTGCAG
Seq C2 exon
CAAACCTCTGAGCCTTCCTACCCAGACATCCTCCTCATTGCCATCAACCGACATGGGTTACTGCTCATCCACCCCAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(30.4=89.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTTCTGGAATGTGACA
R:
CTTGGTCTTGGGGTGGATGAG
Band lengths:
200-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]