BtaINT0100319 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105886043-105886488:-
Coord C1 exon
chr11:105886367-105886488
Coord A exon
chr11:105886264-105886366
Coord C2 exon
chr11:105886043-105886263
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGCGTCCCATCCCCTGCAGGTG
3' ss Score
9.82
Exon sequences
Seq C1 exon
CTTTGCAGCTGGTGACCTGGTGCTGATCCAGCCCGAGAACACGGCCAGCCACGTCCAGCAGTTCTGCCAGGCGCTGGGCCTGGACCCCGAGCAGCACTTCACACTGCAGCCCCGGGAGCCAG
Seq A exon
GTGAGCCCCGAAAAAACCACGGTGCTCGCGCTGTGCGCTCCCCCACGCCCCCTGGCGCCCTGTCCCCGCGTCCCCGCCCCCAACAGCGTCCCATCCCCTGCAG
Seq C2 exon
GTGTCACCTGCCCTACGCGGCTGCCCCAGCCCTGCTCCGTGCGGCGCCTCGTGTCCCAGTACCTGGACATCGCCAGTGTCCCCCGCCGCTCCTTCTTTGAACTTCTGGCCTGTCTCTCCCCCCACGAGCTGGAGCGGGAGAAGCTTTGGGAATTCGGCTCTGCACGGGGCCAGGAGGAGCTTTGCGAGTACTGCACCCGGCCCCGCAGGACGGCCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061:ENSBTAT00000066145:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(18.6=100)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(33.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCCAGCCCGAGAACAC
R:
AATTCCCAAAGCTTCTCCCGC
Band lengths:
254-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development