RnoINT0099547 @ rn6
Intron Retention
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2468517-2468935:-
Coord C1 exon
chr3:2468814-2468935
Coord A exon
chr3:2468738-2468813
Coord C2 exon
chr3:2468517-2468737
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCTCCATGCCATTCCTGCAGGTG
3' ss Score
10.85
Exon sequences
Seq C1 exon
TTTTGCTGCTGGCGATGTTGTCTTAATTCTGCCCTCTAACTCGGAGGCCCACACCAAGCAGTTCTGCCAACTGTTGTGCCTGGACCCCAATCAGTTTTTCACACTTAAGCCACGGGAACCAG
Seq A exon
GTGAGTATGGGAGATGCACCAGCTCTGAGGTCCAAGGTGCCACCTAATAACCCAAGCCTCCATGCCATTCCTGCAG
Seq C2 exon
GTGTCCCTTACCCACCAGGGCTGCCTCAGCACTGCACTGTGTGGCACCTTGTGTCGCAGTACTTGGACATTGCCAGCGTGCCCCGCCGTTCCTTCTTTGAGCTCTTGGCTTGTCTCTCCCCACATGCACTGGAGCGGGAGAAGCTGCTGGAATTCAGCTCCGCCAGAGGACAGGAAGAGCTCTGGGAGTACTGTAATCGGCCCCGCAGAACCATCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616:ENSRNOT00000014445:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(18.6=100)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(33.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGACCCCAATCAGTTTT
R:
GTGCATGTGGGGAGAGACAAG
Band lengths:
174-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]