GgaINT0126433 @ galGal3
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1348374-1350493:+
Coord C1 exon
chr17:1348374-1348495
Coord A exon
chr17:1348496-1350272
Coord C2 exon
chr17:1350273-1350493
Length
1777 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
CTCCGGTGCCTCTCTTGCAGGCA
3' ss Score
10.2
Exon sequences
Seq C1 exon
GTTCAGCGCTGGAGACGTGGTGATGATCCAGCCCCAGAATTGCCCTGAAGATGTGCAGCAGTTCTGCCAGCTCCTTCGACTGGATCCAGATAAATGCTTTTTGCTGAAGCCCACAGAGCCTG
Seq A exon
GTAGGTGCTGCTGGCTACTCCTTTACCTCTCTGCCAAGCCTGGAGATCTGCTTTTCCTTTGCTTTAGATCTGGTAAATAAGGAAATAAGGATTTGAGAGTGGCTGGCTGATACAGGACATCTGCCTGCCTTGCAATGCTGGGGCTCTCCTTCTCTCCCAACTCTCTATGCATGTAGGTCTTTCATTAGGGCCAGCATGGCTCATGGGAGGGACCCAGTGATACCAGGGTTGCCTTATGCCTTCATCAGCTCAGAGCGTGAAAGATCCTGCACACTCGCCAGCCCAAGACCCAAGTCAGGTTGCTCTCACTTCTGCCCCCATCCATGCCTATGATTCTTTGCTGGGGCATGCAGGTCCCCTGGCTCTGCCTGCACCCCAGAGTCCTGATGGAGGTGCTTCTGCAGCCACAGACTGACACCAACAACCAGAAAATCCTCCTGAAGGCACCCACTCACCAGGCATTGCTGTGCCTCTGCAGTCTGCATGGTGCCAGGAGAGGTTTCTCTTCTTTCGTCTCCCATGAGTGCTCATCATCTCCCTGGTCTGAGGAACTGAAGATGGCAGGAAGTCAATATGAGATCTCCTGGAAAACATCACCCCAAGACTTTCCTTTGTACTTTAAACTGTACTTTGGTTTGCTCTGTTCTTTCCTGATTGCCTCCAGAACTGAAAGAACCCAGCAGACATCTTCAGCATCACAGTCTTTTTGCCCACACAGGGAGAGCACATGAATCCCTTGATATCCTCCTCTGCAGCCTGCTTGGTGTGGTCAGCAGCAGGAAGGGAGAAGTCCTGGACCTTACAAAGGATGCAGAGCAATTGCCAGCCCCTCTGCTTGATGCCACCTGAAGCTAGACAGTGCTGTGAGGACCCTCTAACGGGCTTCTGTGGCCTAGGAAGTGTCCAAGCTACCATGCCAGGGAACAGGTGCTCTGTCTCCAAGATGCCAGAGCTCCATCCCTGCTATCTCTGAGCACTCTTGATCCTGATATGTCCCAGCGTTGGGCCCTGGCATTTCAGTCCACCTGCGGGGATCTGCCTCTTGTGAAGAATCACAGATCCTGGTTGGTGCACCTGCAGATCGGCATGTGAGCATCCCTGTCCTCTCAGTAGTCTGTCATGCTGTGATACACTTCAGTACCAGTTTGGCTCGATTGGTCAGATGCCAGATTTTGCACAGCAATACTGTGGTCCTTTTTTTATGTAGAAGTGGCTGGAACTCTTTTCATCTTTCCTTTCACTCCACCTGCTGTTGCACAGAGATGTTCTGAGTACCCATAGAGGTTGCAGTAGACCCCTACTTTTTAGCCAGTAATTGCTCCTTCAAGACCATGTGTCCTGCCTTCCTCCCACCATCTCTTGACTGTCTGTCAGTGCTGGGATTCGGGCCTGGGAAGCAAACCCCAGAGAAATTCAAGCTGCTTGTTGCTTGTAAGAGAAGGAGGAGACAAGGACAGGCCTAGTACATAGGACACTGCTGGTTATTTCCATTGTAGTGTGTGGGCATGGTGGGAACCATATGGGTAAGGCATTGTCCAAAAGTATTTAGAAAAAGTAAGGGAGTGCTCAGCACCACTGATGGTCTCTGTTGCAAGCATGTGAGCTTGCAAAGCAAGCTGGGAAGAGAAGGATGGAGTGGGGGCATATGTTGGGAAGCAGCAATGGTGGTGTATAGTCAGCTCCATTAGACTTTCTTGTAGCATGTGGATGCCCTCATGCAGCAGGGCTGGGGAGTGCCAGAGCTGGCCCTGAGCTCTCTCCGGTGCCTCTCTTGCAG
Seq C2 exon
GCACAGCCCTCCCTGCCCACTTGCTGCAGCCCTGCACCATCCGGCACCTGGTCACCCACTACCTGGACATCTCCTGCGTGCCACGGCGCTCCTTCTTTGAGCTCTTGTCCCACTTCTCTACGAACGAGCTGGAGCGGGAGAAGCTGCAGGAGTTCAGCTCTGCACAGGGCCAGGAAGAGCTGTACAGCTACTGCAACCGGCCTCGCAGGACCACCCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(18.7=100)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCGCTGGAGACGTG
R:
GAGGCCGGTTGCAGTAGC
Band lengths:
326-2103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]