MmuINT0106860 @ mm10
Intron Retention
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25249100-25249526:-
Coord C1 exon
chr2:25249405-25249526
Coord A exon
chr2:25249321-25249404
Coord C2 exon
chr2:25249100-25249320
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCTCCATGCCATTCCTGCAGGTG
3' ss Score
10.85
Exon sequences
Seq C1 exon
CTTTGCTGCTGGTGATGTTGTATTCATTTTGCCCTCTAACTCGGAGGCCCACACCCAGCAGTTCTGCCAAGTGTTGTGCCTGGACCCCAATCAGTTTTTCACACTTAAGCCACGGGAACCAG
Seq A exon
GTGAGTGCGGGAGATGCACCAGCTCTGAGCTCCAAGGTACCACCTAATGGCTCTACCCACCAAGCCTCCATGCCATTCCTGCAG
Seq C2 exon
GTGTCCCTGACCCACCAGGGCTGCCTCAGCCCTGTACTGTGTGGAACCTCGTGTCCCAGTACTTGGACATTGCCAGTGTGCCCCGCCGTTCCTTCTTTGAGCTCCTGGCTTGTCTCTCCCAACATGCGCTGGAGCGAGAGAAGCTGCTGGAATTGAGCTCTGCCAGAGGTCAGGAAGAGCTCTGGGAGTACTGCAGTCGGCCCCGCAGAACCATCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471:ENSMUST00000114349:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(18.6=100)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(33.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACTTAAGCCACGGGAAC
R:
AATTCCAGCAGCTTCTCTCGC
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types