BtaINT0101220 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67029325-67029799:-
Coord C1 exon
chr3:67029608-67029799
Coord A exon
chr3:67029404-67029607
Coord C2 exon
chr3:67029325-67029403
Length
204 bp
Sequences
Splice sites
5' ss Seq
GAGGTTATT
5' ss Score
2.73
3' ss Seq
TAATTTATTTACCCATCTAGATT
3' ss Score
6.33
Exon sequences
Seq C1 exon
ATTCTGCTTTCTTCATCTAAACCTATACCAAAAACCTATGTGCCAAAACTTGGCAAGGGTGATGTAAAGGATAAGTTTGAAGCCATGCAGAGAGCAAGGGAAGAAAGAAATCAAAGGAGATCTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAGAGAGAATGGAACAGGAGAAAGCAGGAG
Seq A exon
GTTATTTTATTTTATTTTTATTTTATTCTTGTGCAAATTTTCACCATTTGAATTTACATTTTATTTATTATTCACATTAACCACATTTCATATTAACTGTACTTAAAATATTTTCTGCATTTATAAGCTAATTTCAAACTCTGCATATAATATGATTTAGTCTGAAGTTTTGACATGTTCATGTTAATTTATTTACCCATCTAG
Seq C2 exon
ATTAAAGAAATGCTTGCTTCTGATGATGAAGAAGAGGTATCTTCTAAAGTAGAAAAGGCTTATGTCCCAAAGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921:ENSBTAT00000039125:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=NA C2=0.852
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTTCTTCATCTAAACCTATACC
R:
CTGTTAGCTTTGGGACATAAGCCT
Band lengths:
268-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]