RnoINT0100567 @ rn6
Intron Retention
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257472520-257473402:-
Coord C1 exon
chr2:257473211-257473402
Coord A exon
chr2:257472596-257473210
Coord C2 exon
chr2:257472520-257472595
Length
615 bp
Sequences
Splice sites
5' ss Seq
GAGGTCATT
5' ss Score
3.31
3' ss Seq
GCATTTCTTTAACCACCTAGATT
3' ss Score
4.53
Exon sequences
Seq C1 exon
ATTCTGCTTTCTTCATCTAAACCTGTCCCCAAATCCTATGTGCCAAAACTCGGCAAGGGAGATGTAAAGGATAAATTTGAAGCCATGCAGAGGGCCAGGGAAGAAAGAAATCAAAGGCGATCTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAAAGAGAATGGAACAGGAGAAAGCAGGAG
Seq A exon
GTCATTTTATTTTATTCTTGTGAAAAATCTCATGTTCTTCACTTTAGTGTACTATTCTCACTAACATTTCATATGTAGCGTGGTTAGCAATGCTTTCTATGTCTGTCTGTCTGTCTGTCTGCCTGTGAGCTGACTTAGGTCCTGGGCTCATCCATCCCTCTCTGCAGTTCTTTCACTGCTTACAGTGCCTACAGTCAGCCATGGTCCAAAACATCCAGCCTGCAAGTAAACAGCTTTAAATTCATTCCATTACAGTGCATTTTAGTTCTTTTTTTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCATACAGTGCATTTTATAATCATCCTTTTATAATTACGTTTTTAGTTTCTTACTGTGCCTAATATATGTTTTTCTTGTGTGAATATAATTTTCATACAAGAGAAAACAGCATGCACAGAGCTGAGAATTGTCTGTGGTTTCTGGAATCCCTTGGATACCCTAGAGGGTTCTTCGGCAGTGTGGGGCAGAGGGGCTATTCTAATATAATCGAGTCTAATTTTGACATGTGTTTGCATTTCTTTAACCACCTAG
Seq C2 exon
ATTAAAGACATGCTCGCTTCTGATGAGGAAGAAGAGCCGTCTAAAGTAGAAAAGGCTTATGTCCCAAAGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512:ENSRNOT00000016967:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTCTTCATCTAAACCTGTCCC
R:
TGTGAGCTTTGGGACATAAGCC
Band lengths:
263-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]