RnoEX0059433 @ rn6
Exon Skipping
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257472520-257474733:-
Coord C1 exon
chr2:257474707-257474733
Coord A exon
chr2:257473211-257473402
Coord C2 exon
chr2:257472520-257472595
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTCTTCTAACAAAGATT
3' ss Score
3.92
5' ss Seq
GAGGTCATT
5' ss Score
3.31
Exon sequences
Seq C1 exon
ATGAATGACGTGTCACAGAAGGCAGAG
Seq A exon
ATTCTGCTTTCTTCATCTAAACCTGTCCCCAAATCCTATGTGCCAAAACTCGGCAAGGGAGATGTAAAGGATAAATTTGAAGCCATGCAGAGGGCCAGGGAAGAAAGAAATCAAAGGCGATCTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAAAGAGAATGGAACAGGAGAAAGCAGGAG
Seq C2 exon
ATTAAAGACATGCTCGCTTCTGATGAGGAAGAAGAGCCGTCTAAAGTAGAAAAGGCTTATGTCCCAAAGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=0.938 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGTGTCACAGAAGGCAG
R:
TGTGAGCTTTGGGACATAAGCC
Band lengths:
98-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]