GgaEX0013098 @ galGal3
Exon Skipping
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19632349-19636419:-
Coord C1 exon
chr8:19633859-19636419
Coord A exon
chr8:19632575-19632766
Coord C2 exon
chr8:19632349-19632430
Length
192 bp
Sequences
Splice sites
3' ss Seq
TCTTCTATATCTTCATCAAGATT
3' ss Score
3.87
5' ss Seq
GAGGTTATT
5' ss Score
2.73
Exon sequences
Seq C1 exon
TGTTCTGCAGACTTCTTGCAACCTGAGCTTGCTGGCTCAGACCTCAGCCTGAAGCGGAGCAGCAGAGGTGCAGAGCACATTCCTTTCTGCTAGCACAGTATTGAGAAAAACAGTTTCGTAACAGCCAGCCAGGGCAGCCAGAGCTTGGCTGAGAGCTCTGACTTTCTTTTTAAAATGGAAATTAAAAACCAATATCTGGGACTATGCAGGGGGGTATGAGCATGAATAGTGAATCATAAGCTTGTTCTTTTAATTACTGTTGCATACTTAGAACCTATTCATTTCTTTGTAAGCCTCAAAGGACCAAATGAAATTGTGATACATCAGTTTCAGCCCATGCAAACTTATTTACAGGAAGACGGTCAAAGCATCATTTAAAAGGAAAAGAAAGGAATATAACTAGAACTGTTTCTTTCAGGTAGAAACTGAAAGCAATCTTAAACATACCAGGTGCAGAGCAGAATACCGTAACCATGAATGACATTGCACAGAAAACTGAG
Seq A exon
ATTCTGCTTTCTTCATCTAAACCCGTCCAAAAGTCCTATGTGCCCAAGCTTCACAAAGGTGATGTAAAGGATAAATTTGAAGCTATGCAGAAAGCAAGGGAAGAAAGAAATCAAAGGAGATCTAGAGATGAAAAGCAAAGAAGAAAAGAACAATATGTTAGAGAGAGAGAATGGAACAGGAGAAAGCAGGAG
Seq C2 exon
ATGAAAGAACTGCTTGCATCTGATGAAGACGATGATACAAAGTCATCTAAGACAGACAAAGGTTATGTTCCAAAGCTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.953 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGTAAGCCTCAAAGGACCA
R:
TCGTCTTCATCAGATGCAAGCA
Band lengths:
249-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]