DreEX0050295 @ danRer10
Exon Skipping
Gene
ENSDARG00000057317 | nexn
Description
nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
Coordinates
chr8:18491087-18500322:-
Coord C1 exon
chr8:18499951-18500322
Coord A exon
chr8:18497027-18497218
Coord C2 exon
chr8:18491087-18491287
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCTTTCTTCGGAAGAAA
3' ss Score
4.89
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
GGCAACATGACTGAAGTGATGAGCATGGCGGATGTGTCAACAGACACCCATATGAACAACACAGAAAGCATGAACGATATTGCTGATGTTGATTCAGAGAACACAGTTAATGAGGAAAATCACAAAGAAGAAACACACGACATGTGTTGTGCGCCTGAAGAGGTGGAGATGAACAGCGCGGCAGATGAACCAAAGGAGACAGAGTTACCCGAGAAGGAAAAGCCAAAACAGGAGACCGGCAGGGCGAGGAAACGAGAGAGAGTTCAGAAAACGAAAGAGGAAGACACCAGCCAGTTGGAGAATGAAGAAAAGGCTGATGAATCACATGATATAGATATCACAAATATGTCAGATGTGGCACTAAAACAAGAG
Seq A exon
AAACTGCTCAAAACATCAAAGCCCGTACAGAGGAGTTACATTCCCAAGTTGGGGAAAGAGGATGTAAAGAACAAATTTGAGGCCATGCAGAAAGCTAGAGAAGAGAGAAACCAAAAGAGGAGTCAGGAAGAGCAGAAGAAGCGCAGAGAGCAGTACGTTAAAGAGAGAGAGTACGGCCGCAGGAAACAAATG
Seq C2 exon
GAAGGTGATGACAGTCTTTTGGTGCGAGTGGTGCCTGCGAAATCGCAGAAACAACCAGGAAGAATCAAAATCAACTTCGAGGACATGGAGAAGAGCCGAGAAGAGGAACTAAAGAAACGAACCGAGGAGGAGAAGATGAAGCGGTATGATGAAAACCGGCGGTCCGTCCGAGAGTCTAAACGTCGCTCCGTTGTTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057317_MULTIEX1-2/4=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.963 C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACACCAGCCAGTTGGAG
R:
ACCGCCGGTTTTCATCATACC
Band lengths:
256-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]