GgaEX0013098 @ galGal4
Exon Skipping
Gene
ENSGALG00000008945 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr8:17832125-17833703:-
Coord C1 exon
chr8:17833628-17833703
Coord A exon
chr8:17832344-17832535
Coord C2 exon
chr8:17832125-17832199
Length
192 bp
Sequences
Splice sites
3' ss Seq
TCTTCTATATCTTCATCAAGATT
3' ss Score
3.87
5' ss Seq
GAGGTTATT
5' ss Score
2.73
Exon sequences
Seq C1 exon
ACTGAAAGCAATCTTAAACATACCAGGTGCAGAGCAGAATACCGTAACCATGAATGACATTGCACAGAAAACTGAG
Seq A exon
ATTCTGCTTTCTTCATCTAAACCCGTCCAAAAGTCCTATGTGCCCAAGCTTCACAAAGGTGATGTAAAGGATAAATTTGAAGCTATGCAGAAAGCAAGGGAAGAAAGAAATCAAAGGAGATCTAGAGATGAAAAGCAAAGAAGAAAAGAACAATATGTTAGAGAGAGAGAATGGAACAGGAGAAAGCAGGAG
Seq C2 exon
ATGAAAGAACTGCTTGCATCTGATGAAGACGATGATACAAAGTCATCTAAGACAGACAAAGGTTATGTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000014545fB9914
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAATCTTAAACATACCAGGTGC
R:
CTTTGGAACATAACCTTTGTCTGTCT
Band lengths:
146-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]