GgaINT0037481 @ galGal4
Intron Retention
Gene
ENSGALG00000008945 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr8:17832344-17833703:-
Coord C1 exon
chr8:17833628-17833703
Coord A exon
chr8:17832536-17833627
Coord C2 exon
chr8:17832344-17832535
Length
1092 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TCTTCTATATCTTCATCAAGATT
3' ss Score
3.87
Exon sequences
Seq C1 exon
ACTGAAAGCAATCTTAAACATACCAGGTGCAGAGCAGAATACCGTAACCATGAATGACATTGCACAGAAAACTGAG
Seq A exon
GTATGTACCAATTTTAAAGTAATCAAAGTAATATAGTAATTTACATCTGATGCTTGTAATTAGGGCAGCTAGAAACAATTGTAAAATACAATTATACTGTAAGTCATAGGAGGATATTGAGAGTAGCTTAAGGAAGGTCATCTGGCTTGATAAAATGTGGGAAATGTTCTTATGGGTATTAAAAATGTATGAAGAATGCAAAATTAAGTTAACAAAATATGATGAAATTCTTAATGTCAGGGGAAATTCAGTCTACTTAAAATATTTCTTCATATGCCATGATACACTGAGTGGCAGGAACAAAAGCAAAACATCATTACAGTATCTGCTGTTGGTTTAGGTGGAAAATATGAAACAAACTTTCTTTTAGCCAATTTTCTCAGCATAACTGTACTGACAACATTTCGGCAGTCATTGCACTAAAAAGATGGAAAACGTAATACTGCAAAGTAGGTACTTCTCTTACTTAAGTACTGGCAAAGATGTGTTCATTACCTTTATCAGTATCAGATTCCTGCAAGCCGGGATCTTGACCCTTTACACCATAAAGTCACTGGATGAGTTTCTCTGAATATTAAGAAAAAAAATAAGCATATAACATACTGGAAGTTTTAAATGAACTAATAGCACCATGTATTTAAAACCATTTACTCATGTGGAAGAGCTGCAGAGCACAGATGTGTTCTGTTACATGTCTGCCTATTTACATTTATTTTAAATGTGGTGTTAGGGGTATAGGACCTCTTCTGAGTGCTTACAATTTCGATGCAACAATACAAATCTATATACAATGTTTAAGCCCATAGAAATAGAAAGAAAAGTGTACATTTGTATTGCTCATATACTTAGTTATGTGGCACTCATCACAGTTTTTAAATTTAATACAGTGCCAAAACTTGTTTAGGATATTTCAGTATTTATAACTGTTTATTTGTGACCAAATACTTAATAGATGATGGCTAGTGGCACAAAGTTCATAATCCCAAATGTACTTTTATGTTCTTACATTCTTTCTAATCCAGTCTGACTGCTTCTGTTCATCTGTTTCAACTTTCTTTTTCTTATCTTCATTTCTTCTATATCTTCATCAAG
Seq C2 exon
ATTCTGCTTTCTTCATCTAAACCCGTCCAAAAGTCCTATGTGCCCAAGCTTCACAAAGGTGATGTAAAGGATAAATTTGAAGCTATGCAGAAAGCAAGGGAAGAAAGAAATCAAAGGAGATCTAGAGATGAAAAGCAAAGAAGAAAAGAACAATATGTTAGAGAGAGAGAATGGAACAGGAGAAAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945:ENSGALT00000014545:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATCTTAAACATACCAGGTGCA
R:
CTCCTGCTTTCTCCTGTTCCA
Band lengths:
262-1354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]