DreINT0103971 @ danRer10
Intron Retention
Gene
ENSDARG00000057317 | nexn
Description
nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
Coordinates
chr8:18497027-18500322:-
Coord C1 exon
chr8:18499951-18500322
Coord A exon
chr8:18497219-18499950
Coord C2 exon
chr8:18497027-18497218
Length
2732 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CTTTTCTCTTTCTTCGGAAGAAA
3' ss Score
4.89
Exon sequences
Seq C1 exon
GGCAACATGACTGAAGTGATGAGCATGGCGGATGTGTCAACAGACACCCATATGAACAACACAGAAAGCATGAACGATATTGCTGATGTTGATTCAGAGAACACAGTTAATGAGGAAAATCACAAAGAAGAAACACACGACATGTGTTGTGCGCCTGAAGAGGTGGAGATGAACAGCGCGGCAGATGAACCAAAGGAGACAGAGTTACCCGAGAAGGAAAAGCCAAAACAGGAGACCGGCAGGGCGAGGAAACGAGAGAGAGTTCAGAAAACGAAAGAGGAAGACACCAGCCAGTTGGAGAATGAAGAAAAGGCTGATGAATCACATGATATAGATATCACAAATATGTCAGATGTGGCACTAAAACAAGAG
Seq A exon
GTAAAGTATGAAGAGGCTATCACAATATAGAAATTACACATGTAAATCAATATATTAAAAACAATTAAGTACAATAACTTCTAAAAATGCAAATGAATACATTTGGGTTAATCATTAACACCTATCTGTGCAATATGATGATACGCATATAAACTGTTAATGATTTTAGTAAATTACACAGTATTTAACTGTAATGTGAACTTTATTTTACTGTTGGACAGTTATACAGTATGTTACTGTATTTTAAAGTTGTATTGGGAAAATGACTGTATATTTTACTGTAAAGATATACAACATTGTAAATACATAGAGCAAAATAAATGGTGCTGCACTGTAAATGTAAATACAGTATTTTTGCTGTTTTACAATAAGTTACTGGCGAACTACTGCCCCAGTAAGTTACTGTAGATTTTACAGGAAATTGATAACAGCGTATGGTATGGACCAAACAAAAAGTCTGTGGTTTCATATGCTCTATCTTTAATTTCGTGCTGTCACAAAATAATTTTTTTTACAGTAATACATTTCCATTATTTAACCTAAAATAACACGCAATTCTGGTTATGCAGACAGAAACATGCATAACAGCATCGTGAGAAAGTAAAAATCCCGAAAGTACAGCGTTTAGATTTAGCATTTTATTTAGTAATATTTTAATTGTTTTTTACTTTTTAATCAAATATTTGCTCTGAAGTTCTAAATAAAGTAAGAACTATGAGCACAATGAGTACATATCTGAGTATTTACTTTGAAATGTAAAAAAAGAAATAGTCCTTACCCGTGGTCAAAGTATTTAAACAAAAAAGTTACAGAATTTACAGAAATTATACTATTTAATGATATATATTGTATATATCAGGATATGAGATGACTTACATTGTCAAATCACATTCTTGTCATATCACTAGCACTTTTACACTATTAACAAGTTTTCCAGTAACTTACTGTAAACTAATTACAGCAACAAAACTATACTTACATTTACATTTACAGTGTTGTATATCCTTACTGTAAATTACTTATAATGCAACTTTAAAATACAGTAACATACTGTAAAACGGTCTTACAGTAAAATTCAGTTCATATTAGGGCTGCACAATATATCGTTTCAGTATCTGCAATGTTCAGTTATGATTCAATAGTTAACTAGGTTTAGGTTTAAATTGTTTAGGACACATGAAAATTGTGTAGTTAATGCAAACCAATAAATGCAGAGTTTAACCAAAAAAGTTTATTATTTGCCTGTGTTTTTAAGGTCTGACACAAGAAATTTTTACCATTTTTAACTTTAATGAAGAATAATTTTTATTCGTTTATACAGTTAAGGCTGTTGCAGCGTTGTTTTAAATTTGATTATTCAAATTCTGCAACTTAATACTATTTTATTCCTCCCAATACCATAAAACACTGTTTATTTCACTGTTCTCTTTGGTTTTAATTAGTTAATAATTTTTAACATTACAATGCACGATTCATGTCTCTACAGAATCAGTCCAATCGATCTTAATGAATAAATTATTTCTATATTGCAGTTTAAGTCATCTGGTGAAATTGTATATATACTGCAATATTTGTCGCAGAAAAATAAAATATCGCAGTGCCTTATCATAGATCCAGCTCAATAAGGCGTAAGACGTGTTTGGTGTAACTTGTTGCTATTTTCTGACCAGCGCAACCCTAATTTTCACGTTTTAACCACATTGTTTAAATAGCAAATCAATTAGCGTGACTTTGTGGACTCATGGGTTTGCTGGTCTATAAAGGATGTGTGTATGAATGAAAGTAAAGGAGTAAAGAGTAAAAGTAAAGTAAAAAGAAAGTAAAGAGGCCGAATGGAGGAGGCTCATTCTTAATCCTCTTGCAGATATTTTTTTTTGCTAGTGAAGCATTCAGTTTGTTTATGCAGTTTTTTCCACTTACAATGTCTGCCATGTAAATAGCAAATGCACCATGGTGCGACGCAATTGAATCTTAAAGGCAATGAAAGATAAGTCTCTGTTTGGTTTAATGCCAATTATGCTCAAAACACACCCATAACTCATTAAGAGAATAAGCACAACCCTGTTAGACCATGTGCCGGGCTCAAACTGTATTTTTCCATCCTAAAAAAAAATTTAAAATAGCAAAAGTGGATTTGGATACACTCTTAATGCTTTTGCGCTTTAGACTTTGCGCCAGAATTTTAAAATAGGGCCAATAAATGATATTATATCGAATCGTGATAAAATGAATGCCAATAGCAATGATAAGCTCTGGACTTTTTACTCCATATTGATCTAAGAGTTAATCACACTGCAGAAATATGCAACAATAACAATCTAAAAGTATGTTGGTATTGGAGATGTACCGAATTTTCAGTCACCAAAAATTTATCTGCTGAAAATATGTTACGCCATTTAATGGGTCCTCTAATTTTTGTGGCTTCAGTCATTGTTGTGGTACTCTTTAAATCTGGAAGTAATAATAGCTTATATTGAAATACATATCGCTATCATTCAATATGGAAAATAATTATAGAGATAGCATTTTTGCCATATCGCCGAGCCCTAATGTACAGAAAAAGCTGTATTTAGTTGTATTTAACTTCAATTGTTTTAATACTTTAGACACTCTTTTTTGTCTTGGACTCATTTTTCACACGTATTTATTTTAATAATAAAAAAGACAATAACAAACTCTTTATTTCACTTTTAACACTCTCTTGCATGCCTCCTTTTCTCTTTCTTCGGAAG
Seq C2 exon
AAACTGCTCAAAACATCAAAGCCCGTACAGAGGAGTTACATTCCCAAGTTGGGGAAAGAGGATGTAAAGAACAAATTTGAGGCCATGCAGAAAGCTAGAGAAGAGAGAAACCAAAAGAGGAGTCAGGAAGAGCAGAAGAAGCGCAGAGAGCAGTACGTTAAAGAGAGAGAGTACGGCCGCAGGAAACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057317:ENSDART00000148802:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]