GgaINT0037481 @ galGal3
Intron Retention
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19632575-19633947:-
Coord C1 exon
chr8:19633859-19633947
Coord A exon
chr8:19632767-19633858
Coord C2 exon
chr8:19632575-19632766
Length
1092 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TCTTCTATATCTTCATCAAGATT
3' ss Score
3.87
Exon sequences
Seq C1 exon
CTTTCAGGTAGAAACTGAAAGCAATCTTAAACATACCAGGTGCAGAGCAGAATACCGTAACCATGAATGACATTGCACAGAAAACTGAG
Seq A exon
GTATGTACCAATTTTAAAGTAATCAAAGTAATATAGTAATTTACATCTGATGCTTGTAATTAGGGCAGCTAGAAACAATTGTAAAATACAATTATACTGTAAGTCATAGGAGGATATTGAGAGTAGCTTAAGGAAGGTCATCTGGCTTGATAAAATGTGGGAAATGTTCTTATGGGTATTAAAAATGTATGAAGAATGCAAAATTAAGTTAACAAAATATGATGAAATTCTTAATGTCAGGGGAAATTCAGTCTACTTAAAATATTTCTTCATATGCCATGATACACTGAGTGGCAGGAACAAAAGCAAAACATCATTACAGTATCTGCTGTTGGTTTAGGTGGAAAATATGAAACAAACTTTCTTTTAGCCAATTTTCTCAGCATAACTGTACTGACAACATTTCGGCAGTCATTGCACTAAAAAGATGGAAAACGTAATACTGCAAAGTAGGTACTTCTCTTACTTAAGTACTGGCAAAGATGTGTTCATTACCTTTATCAGTATCAGATTCCTGCAAGCCGGGATCTTGACCCTTTACACCATAAAGTCACTGGATGAGTTTCTCTGAATATTAAGAAAAAAAATAAGCATATAACATACTGGAAGTTTTAAATGAACTAATAGCACCATGTATTTAAAACCATTTACTCATGTGGAAGAGCTGCAGAGCACAGATGTGTTCTGTTACATGTCTGCCTATTTACATTTATTTTAAATGTGGTGTTAGGGGTATAGGACCTCTTCTGAGTGCTTACAATTTCGATGCAACAATACAAATCTATATACAATGTTTAAGCCCATAGAAATAGAAAGAAAAGTGTACATTTGTATTGCTCATATACTTAGTTATGTGGCACTCATCACAGTTTTTAAATTTAATACAGTGCCAAAACTTGTTTAGGATATTTCAGTATTTATAACTGTTTATTTGTGACCAAATACTTAATAGATGATGGCTAGTGGCACAAAGTTCATAATCCCAAATGTACTTTTATGTTCTTACATTCTTTCTAATCCAGTCTGACTGCTTCTGTTCATCTGTTTCAACTTTCTTTTTCTTATCTTCATTTCTTCTATATCTTCATCAAG
Seq C2 exon
ATTCTGCTTTCTTCATCTAAACCCGTCCAAAAGTCCTATGTGCCCAAGCTTCACAAAGGTGATGTAAAGGATAAATTTGAAGCTATGCAGAAAGCAAGGGAAGAAAGAAATCAAAGGAGATCTAGAGATGAAAAGCAAAGAAGAAAAGAACAATATGTTAGAGAGAGAGAATGGAACAGGAGAAAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945:ENSGALT00000014545:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTAGAAACTGAAAGCAATCT
R:
CTCCTGCTTTCTCCTGTTCCA
Band lengths:
278-1370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]