BtaINT0101219 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67029608-67031128:-
Coord C1 exon
chr3:67031050-67031128
Coord A exon
chr3:67029800-67031049
Coord C2 exon
chr3:67029608-67029799
Length
1250 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTTATTTTCTTCTAACGAAGATT
3' ss Score
4.29
Exon sequences
Seq C1 exon
GAGCAGAAAATTACAAAGCTTCATAATCACCCCAAGACCACATAGAGCAAACATGAATGATATTTCCCAAAAGGCTGAG
Seq A exon
GTAAGCTTTTTAACTTAAAAGTTAAAAAATGGGGGAATCTTAGAGGTGACTGCATAACTGCTAGAAGGGCAACTGGTGGAAAGGTCATCCACAGAAGTTCATAGTAACATAGTGTCAAGATGTAAGACATAAGAAGAGATAAAATTCACAAGCTGGTCTCAGTATTTTCATTTGGATTCTTATCTAGGAAGCATGATTATAAAATTGTGTGTGTGATGGTAAAGTGGATGTGATGGCTAGCATCTTGAGTAAATTTTAACATATTGACAAATCTTAGAAATTGTTTTTTCAGTATTAAAAAAACCCAGAATTGACATATACTCTTATGAGAAATCAATGACACCATAAGTAGAAAATAAAATAGAGGCTGTGTATGCCACAGATTAATTAATCAATTTGCCATTAACACTAGGAGAAGGAGTTTGGCGTTCTGAGGCGATGAAGTTTTATTTACTGAAACTTCTTTTAGAAATCAGTGTAATTTTCAAAAAGATAAAAATAATTTGGTTTCCTGGTTTCAAAATGGAGGAAACCCGTTTCTCCAGCCTTTTAACAGATTCCTCCTTCTTTGGAAAGCTTGTTTGTCATTTGGAAATTTTCCCTAGAGCACATCCTACTTGGAATGATACCGCATTCTCACGTATTTTCAGTGTTGGCTTAAAGAAGTTCTAGATGGGCAGTGCAGCAGTAGTAACAACAAAAATCACTGCTTGTGCACAAAGGCCATGGCTCACCTCAACCACAAATGAGAAGCAAAGGCTCTTCAGTTTTCCTCATATTAGATACAGAAACAAGCAAGAAAATTAATATATAAATTAGGCTTAAGCTTTTTGCTATGTTTTCAACTTATCTAACTTATTAAAATTAGACTTGGTATCTTTTAAGCAAGTAAAATCTGAATCTTTAATAATGAAATAGGTCAGTAGAATACAGGTTGTTTTGAAATGGAATGCAGTCTTCAAAGTTTATATTTTTCCAGCGTTCAGCTTCAGTGGAACACATACAAAATGGGACTTCCTTGCAATATATTAGTAACATTTTTACTCTCATATTTTCTGTAATATCATCTTTCATACTTAGATTTTAGAAGGTATCTAATCTGATTCTTATACAAATAAAGGTTTCAAACTCATTTCTATATTCTGTTTTGATAAATATTTCTGATATTGCTTATTCTGATCTATCTTTACCTAATTTCTTCCTTTCTTATTTTTTTTTAACTTTCTTCTCTTTATTTTCTTCTAACGAAG
Seq C2 exon
ATTCTGCTTTCTTCATCTAAACCTATACCAAAAACCTATGTGCCAAAACTTGGCAAGGGTGATGTAAAGGATAAGTTTGAAGCCATGCAGAGAGCAAGGGAAGAAAGAAATCAAAGGAGATCTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAGAGAGAATGGAACAGGAGAAAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921:ENSBTAT00000039125:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.922
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGAAAATTACAAAGCTTCATAA
R:
CTCCTGCTTTCTCCTGTTCCA
Band lengths:
271-1521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]