BtaEX0024337 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67029325-67031128:-
Coord C1 exon
chr3:67031050-67031128
Coord A exon
chr3:67029608-67029799
Coord C2 exon
chr3:67029325-67029403
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTCTTCTAACGAAGATT
3' ss Score
4.29
5' ss Seq
GAGGTTATT
5' ss Score
2.73
Exon sequences
Seq C1 exon
GAGCAGAAAATTACAAAGCTTCATAATCACCCCAAGACCACATAGAGCAAACATGAATGATATTTCCCAAAAGGCTGAG
Seq A exon
ATTCTGCTTTCTTCATCTAAACCTATACCAAAAACCTATGTGCCAAAACTTGGCAAGGGTGATGTAAAGGATAAGTTTGAAGCCATGCAGAGAGCAAGGGAAGAAAGAAATCAAAGGAGATCTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAGAGAGAATGGAACAGGAGAAAGCAGGAG
Seq C2 exon
ATTAAAGAAATGCTTGCTTCTGATGATGAAGAAGAGGTATCTTCTAAAGTAGAAAAGGCTTATGTCCCAAAGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.922 C2=0.852
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGAAAATTACAAAGCTTCATAA
R:
TGTTAGCTTTGGGACATAAGCCT
Band lengths:
157-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development