MmuEX0031536 @ mm9
Exon Skipping
Gene
ENSMUSG00000039103 | Nexn
Description
nexilin [Source:MGI Symbol;Acc:MGI:1916060]
Coordinates
chr3:151916015-151918329:-
Coord C1 exon
chr3:151918249-151918329
Coord A exon
chr3:151916576-151916767
Coord C2 exon
chr3:151916015-151916093
Length
192 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTCTAACACAAAGATT
3' ss Score
3.42
5' ss Seq
GAGGTCATT
5' ss Score
3.31
Exon sequences
Seq C1 exon
GTACAAAAATATACAAGGCTTCAGCCCCAAACCACATAACCACATATAGCAAACATGAATGACGTTTCGCAAAAGGCAGAG
Seq A exon
ATTCTGCTTTCCTCATGTAAACCTGTCCCTAAGTCCTATGTGCCAAAGCTTGGCAAGGGAGATGTAAAGGACAAGTTTGAAGCCATGCAGAGGGCCAGGGAAGAAAGAAATCAAAGGCGATCTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAGAGAGAATGGAACAGGAGAAAGCAGGAG
Seq C2 exon
ATTAAAGAAATGCTTGCTTCTGATGATGAGGAAGAAAGTTCTCCTAAAATAGAAAAGGCTTATGTCCCAAAGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039103_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.875 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAAAATATACAAGGCTTCAGC
R:
TGTTAGCTTTGGGACATAAGCCT
Band lengths:
159-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: