GgaINT0037482 @ galGal3
Intron Retention
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19632349-19632766:-
Coord C1 exon
chr8:19632575-19632766
Coord A exon
chr8:19632431-19632574
Coord C2 exon
chr8:19632349-19632430
Length
144 bp
Sequences
Splice sites
5' ss Seq
GAGGTTATT
5' ss Score
2.73
3' ss Seq
TTCTATATTTCATCAACCAGATG
3' ss Score
6.47
Exon sequences
Seq C1 exon
ATTCTGCTTTCTTCATCTAAACCCGTCCAAAAGTCCTATGTGCCCAAGCTTCACAAAGGTGATGTAAAGGATAAATTTGAAGCTATGCAGAAAGCAAGGGAAGAAAGAAATCAAAGGAGATCTAGAGATGAAAAGCAAAGAAGAAAAGAACAATATGTTAGAGAGAGAGAATGGAACAGGAGAAAGCAGGAG
Seq A exon
GTTATTTTTCTTTGCAAATATTTTATGTTATTTTAATATTCAGTATTGCACGTGAAAGTATTTTCACATTATTTTAAGACAATATTATTGGAATTTTACTTAAGGTGTAAAAATAGTTCACTTTTTCTATATTTCATCAACCAG
Seq C2 exon
ATGAAAGAACTGCTTGCATCTGATGAAGACGATGATACAAAGTCATCTAAGACAGACAAAGGTTATGTTCCAAAGCTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945:ENSGALT00000014545:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAAAGTCCTATGTGCCCA
R:
GCTTTGGAACATAACCTTTGTCTGT
Band lengths:
244-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]