BtaINT0101221 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67029091-67029403:-
Coord C1 exon
chr3:67029325-67029403
Coord A exon
chr3:67029240-67029324
Coord C2 exon
chr3:67029091-67029239
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTTGTTTCATATATTCTTAGGAA
3' ss Score
7.53
Exon sequences
Seq C1 exon
ATTAAAGAAATGCTTGCTTCTGATGATGAAGAAGAGGTATCTTCTAAAGTAGAAAAGGCTTATGTCCCAAAGCTAACAG
Seq A exon
GTAAGCCACTTGAGGGGTAAACTGTAAATAAAACTGCAAACAAAGAAACAAAACAAAATGTCAAACTTGTTTCATATATTCTTAG
Seq C2 exon
GAACTGTTAAAGGTAAATTTGCTGAAATGGAGAAACAAAGACAAGAGGAACAAAGGAAGAGGACGGAGGAGGAACGAAAACGCCGAATTGAGCAGGACCTTTTAGAGAAGAGGAAGATACAACGTGAATTAGCAAGAAGGGCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921:ENSBTAT00000039125:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=0.660
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTATGTCCCAAAGCTAACA
R:
CTGCTCAGCCCTTCTTGCTAA
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]