HsaINT0112846 @ hg38
Intron Retention
Gene
ENSG00000162614 | NEXN
Description
nexilin F-actin binding protein [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr1:77917960-77918273:+
Coord C1 exon
chr1:77917960-77918038
Coord A exon
chr1:77918039-77918124
Coord C2 exon
chr1:77918125-77918273
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTTTTTCATATATTTTTAGGAA
3' ss Score
10.3
Exon sequences
Seq C1 exon
ATTAAAGAAATGCTTGCTTCTGATGATGAGGAAGATGTATCTTCTAAAGTAGAAAAGGCTTATGTTCCAAAATTAACAG
Seq A exon
GTAAGAAGCTTGAGGGGTAAATAGTAAATTAAATTGCAAAATAGAAACATAACCAAGTATCAAACTTTTTTTTCATATATTTTTAG
Seq C2 exon
GAACTGTGAAGGGTAGATTTGCTGAAATGGAGAAACAAAGACAAGAGGAACAAAGGAAGAGAACGGAGGAGGAACGAAAACGCAGAATTGAGCAGGATATGTTAGAAAAGAGGAAAATACAGCGTGAATTAGCAAAAAGGGCTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162614:ENST00000334785:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.830 A=NA C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGCTTCTGATGATGAGGA
R:
ATCCTGCTCAATTCTGCGTTT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development