RnoINT0100568 @ rn6
Intron Retention
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257472129-257472595:-
Coord C1 exon
chr2:257472520-257472595
Coord A exon
chr2:257472278-257472519
Coord C2 exon
chr2:257472129-257472277
Length
242 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTTGTTTTGTGTGTGTTTAGGGA
3' ss Score
8.93
Exon sequences
Seq C1 exon
ATTAAAGACATGCTCGCTTCTGATGAGGAAGAAGAGCCGTCTAAAGTAGAAAAGGCTTATGTCCCAAAGCTCACAG
Seq A exon
GTAAGGCGACCCTTGTGGGCTGAATGTAAATGGGACTGTGAGGGAAAGGAACATGGCAAAGTTGCCAAGGTTTGTGTGTTTTGTTTTGTTTTTTTTTTTTTTTGTTTTTTTTTTTGTTTTTTTTTTTTTGAGCTGGGGACCGAACCCAGGGCTTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAGTGTGTTTTGTTTTTGTGTGTGTATTGTGTGTGTTGTTTTGTGTGTGTTTAG
Seq C2 exon
GGACAGTTAAAGGCAAATTTGATGAAATGGAGAAACACAGACAGGAAGAACAAAGGAAGAGAACAGAAGAGGAGAGAAAACGCAGAATTGAGCAGGATCTGTTAGAAAAGAGGAAAATGCAGCGTGAATTAGCAAAAAGAGCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512:ENSRNOT00000016967:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATGCTCGCTTCTGATGA
R:
CTGCTCAGCTCTTTTTGCTAATTCA
Band lengths:
220-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]