GgaINT0037483 @ galGal3
Intron Retention
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19632115-19632430:-
Coord C1 exon
chr8:19632349-19632430
Coord A exon
chr8:19632264-19632348
Coord C2 exon
chr8:19632115-19632263
Length
85 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTGTGTGTTTCATGTCACAGGAA
3' ss Score
9.14
Exon sequences
Seq C1 exon
ATGAAAGAACTGCTTGCATCTGATGAAGACGATGATACAAAGTCATCTAAGACAGACAAAGGTTATGTTCCAAAGCTAATAG
Seq A exon
GTAAGAGAGGCCAAAGTTTAAAGGCCGCATAACCCACTAGGTAGGTATTAGATCTCGTTACTGAATTGTGTGTTTCATGTCACAG
Seq C2 exon
GAACTGTTAAAGGCAAGTTTGCAGAAATGGAGAAGCAAAGACAAGAAGAAGAGAGAAAAAGAACAGAAGAAGAAAGAAAGCGCAGAATTGAGCAGGATATGATTGAGAAAAGGAAAATTCAAAGAGAATTAGCCAAAAAAGCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945:ENSGALT00000014545:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGCATCTGATGAAGACGA
R:
TCCTGCTCAATTCTGCGCTTT
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]