BtaINT0103584 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017599 | NR2F1
Description
Bos taurus nuclear receptor subfamily 2, group F, member 1 (NR2F1), mRNA. [Source:RefSeq mRNA;Acc:NM_175804]
Coordinates
chr7:95454540-95457844:+
Coord C1 exon
chr7:95454540-95454792
Coord A exon
chr7:95454793-95457316
Coord C2 exon
chr7:95457317-95457844
Length
2524 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TCTCTCTTTCTTTTTGTCAGCGG
3' ss Score
7.59
Exon sequences
Seq C1 exon
NGCCAGGGCCCGCCCGGCTCGGGCCAGAGCCAGCACCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCCATCACTACGGCCAATTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGAACTTAACTTACACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAATACTGCCGCCTCAAGAAGTGCCTGAAAGTGGGCATGAGGCGGGAAG
Seq A exon
GTGAATATTTCTTCCGTGCTTTTTCTCCCGGAGCTTCGCCCGCCTCCCCGGCCCTCTTTCTCTCTCTCTCTCTCTCCCTCTCTCGCGGGGGTGGCTGCTGTCTGGGGCTGGGGCTCCTGCGGTCCCGGCCCGTCCCAGCTCCCCCCATCCCCGCTGCCTTCCTCCCCCGGCGTCTCCCCCACCCCACCCCCTACCCCCCGCCCCAGCTCGCTGCCGCTGTCTCCCCCTCCCGGCCTGCGCTCGTCTCCCCGGCTTCTCCACCCCGCCCGCTGCCTGCTCGGGACGGTGCCCCTAGGATCGTGAGCTGTGCTGGAAAATCCCCTCCCTCTGTCTTGGATGTGCTCGGTGTGTGTCTCTTTCCCGCGTGTGCGTGAGGATGCTTGGAGCTGTGCTGGCATGAACTTGGGGGGAGGGCTGCTTATTACCCCCAGAAAACTCGGTTTCTGTGGTTTTTGTGTTTTTGTTCTTTTTCATTCCCCTTTCCTCTCCATGTCTTCATTGCCCTTTATTTAAGATGGGGGAGGGCTGGAGGAGACTGGAGGATTCTGAACCATAGATCCCTGACTGCATCATCCTTTTGGAAGCTTAGCTTGGAAAAAGAGGAGTGAGATTTATTGCACTTGTAGGTCTAATTAGGAGGGAAGGGGGGCGAGGGGGGGCTTCTGGCCTGTTCACTGGTTCCCTCTCCTCTCCACCGAGCTGGGGCCGCCTCCTCCAGAGCTGTGGCCTTGTTTTCACCCCTCTACTTTCAAAGGAAAGTTTGTGACTGAACCGTGCTTTCATAGTCGTGTCATTTTTTTTTTAAAGCATGATACTCGTTTTATTTCTTCATCAAACTCCACCCTCTGTTTAAATACTGCATACAAATTACAATTAACAACGGCATTTACCGATCCTTCTGATTTGGCTATAATGCATAGACTGCAGCTGGCATGAGCTTCGACATCATTTAATCCCTGTGTTGTATGGCTTTGGTTTCTTTTAACACAACTTTTGATGTTGTATTTAGATATGCTTCATGTTCATGTGGCAAGAAATGCAGCACTTTTCTTATAAATATATCTAGCCATTTACAGTTAAAGTTTATCTCCTGACAATCATTAAAGATGTCTTATAGTCAAATTAGCAAACCAGTCAATTTTGCAGAATGCAGATTACTTCTTCTTGTAATTGACTTTAAAATTATATTTTATATGCCACAAGAAAAGAAATTGAATTTCTTCAGATCTCAAGGAGCAGGCAAATATGACGACTTCATTTCTAGCTCCAGGGAGATTTTATAGGCATCTGAAGGAAAAAAAAAAAAAAACAAACTTTGAATTGTACTCTCATTTAATTGAAAAATAACTGCCAAGTTCAAAACTATAATTAGAAAAAAGTATTCTAGCCAGTTATGTTTTAAGAGTTTAAATTGCATTGAGGCTTGCATTAAAATGAGAATCAGTGCAAACTTAAGAAAATAGTGTACAACCTGAATTAAGAAAGCTACGTCTACATGGACATATCTATATTAATTTGTTGGGGGGGGGAGAGTTCAGTAGCCCTAACTTTTCCTAAAGTTGTCTTTGTTTACATGGCAATTTAAAACGCTGGCACTGTTGAAGTAAAACATATACATAAAAAAAAAAAAAAAAACTTTGGTCAGCTTTAAGAACTCAAAGCATGCTTACGTTCTGCATTCAGATGGTTAATGAATCCAGTGTTTTTGCAGTTGCAAGCTCGTGCATTCACTGGGCAAAAGCTGGCTGCAGGTTGCTGTGGCACCTCACAGGACAGACATTAATTATATTTTCCACTTTTTTCAATAATGTTTGGCTACTGTAAGTTCAACTTCTTTCTTGATTTTTTTTTTTTTCAATTTTCTGTTGCTTTTAACAGTGAGAACTTTGTGTGGGATGGTGGGGAGGAGGGGATAGGGGAGGGGTGCAGGATACTAGTTTGCTATTCAAAAGTTGTAAGTGGTGAGTAGGGTATGTAACTTCTGTCTGTTTTAAGGATAATTCCATAGCATTTTTAGAGAATATGGAAATGTTTTGAACAAAACCTGCTTGCTTGCAAATGAAGAGGCAGCTAGGCATGTGCCTAGAACCACAACCTTTTCTCTGGTTGCGCCTGGTTTTTGTTTTTGTTTTATCCTGATTGGGTTCCTTCTGGAGGGGTGAGTGGGATGTCATTAATCTGCGTGTGACCTGGTGGTGGTCGAGGGGTTGGGGTGCACTTTCTCGGTCACTCTGGGCTGGAGCGGGGAAGCCCTTAACTCAGGCCTAGTTCTGCCTGGGTCTGGGGTGGACAAGAGCGCCCGAGATGGCCGGGCGGATCGAGCCACGGAGCTGGAGGGCTTCACCCCTACGCCGTCTTCCTCCGGGTGTGGGCCGGGAGTGAAGGCCAGCGCCAAGGAAGATGCTCGGCGCTGGTGGCCGCGGAGACCAGCCTCCGCATTGTGTCGGTGCGCTGCGGGGCGGCCCGGACTGTTCGCAAGCCCCCTGGATGCACATTGCCTCTTTTCTCTCTTTCTTTTTGTCAG
Seq C2 exon
CGGTTCAGCGAGGAAGAATGCCTCCCACTCAACCCAATCCAGGCCAGTACGCACTCACCAACGGGGACCCCCTCAACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGTTACGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGCTGGCCGCGCGCCTGCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCCTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTCCGCCTGACCTGGAGCGAGCTGTTCGTGCTCAACGCAGCCCAGTGCTCCATGCCGCTGCACGTGGCGCCGCTGCTGGCCGCCGCCGGCCTGCACGCCTCGCCCATGTCCGCCGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCGGCCGAGTACAGCTGTCTCAAAGCCATCGTGCTGTTCACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017599:ENSBTAT00000023401:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=82.4)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]