RnoINT0102973 @ rn6
Intron Retention
Gene
ENSRNOG00000014795 | Nr2f1
Description
nuclear receptor subfamily 2, group F, member 1 [Source:RGD Symbol;Acc:621682]
Coordinates
chr2:5576022-5579894:-
Coord C1 exon
chr2:5578959-5579894
Coord A exon
chr2:5576550-5578958
Coord C2 exon
chr2:5576022-5576549
Length
2409 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TCTCTCTTTCTTTTTATCAGCGG
3' ss Score
8.98
Exon sequences
Seq C1 exon
GCCGCCTGTGCCATTTCTGATTTTGCAACTTGGGGAAGAAGAAAAAAGCGAGAGAAGGGAGCTCGCTCGCCGGGGGGTGGGGAGGGGGGAGAGAGAGCGCGGCCCCCCCAGGAACGGAGCGCGGGGGGGAGCGGGCGAGGGGAGCAGGGGTGTTGGGGGGGAGCCTGAGAGCCTGGGGGGGCTGCAAAAAGAGAGAAAGAAAACAGCAGGAACCACAACAAAACGCCAGCAGGGCGGGCGGGCGCGCAGCAGCAGCGGGGCGGCCGAGGCAGTAACGGCGGCGGCGGCGGCGGCGGCGGCGGCTCAGGCAGAGGCCGGTGCCCGGCTCGGGCTTGGCTCCGGCGACCCCGGGGTGCCCGGTGGGCCCCCCGCCCCCTCCCCCTCCCCCCTTCCCCTTCCCCTTCCCCTCCCAGCGCGCCCGCGCGCCCCGCGGCCCTCGGCGAGCAGCTCGGCTCCCCCCAGCGCTCCCCGGGCCCAAAGATATGGCAATGGTAGTTAGCAGCTGGCGAGATCCGCAGGACGACGTGGCCGGGGGCAACCCCGGCGGCCCCAACCCCGCAGCGCAGGCAGCCCGCGGCGGCGGCGGCGGCGAGCAACAGCAGGCGGGCTCCGGCGCGCCGCACACGCCGCAGACCCCGGGCCAGCCCGGAGCGCCCGCCACCCCCGGCACGGCGGGGGACAAGGGCCAGGGCCCGCCGGGTTCGGGCCAGAGCCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAATTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGAACTTAACTTACACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAATACTGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAG
Seq A exon
GTGAATATTTCTTCTCTGCTTCTCTCCCTGCGCTTCGCCCGCCTCCCTGCTCTTTCTTTCTCTCTCGCCTTGGTGGCTATGGCTGTGGGGATGGGGCTCCTGTGGTCCCAGCCGGTCCGGCTTCCCATTCCTCGCTGCTTTCCTCCCCCAGCGTCCCCCACCCCACCCCCCCAGCTCGCTGCTGCTGCCTCCCCCTCCCGGCCTGCGCTCCTCTCCCGGGCTCCTCCACCCCTCCCGCTGCCTGCTCAAGATTGTGTCCCTGGGATCCAGAGCTGTAGCTTAAAAATCCCTCCCTTCCTCCGTTGGATGTGCTCCGTGTGTGTTTCGCTCCCGCTTGTGTGTGAGGATGCTAGGGGCTGTGCTGGCATGAACTTGGGAGGGGTGCTGATTTTCCGCAGAAAACCGTTTCTCTCTGTGTGTGTTTTTGGTTTTGTTTTTTCGTTTTTCCCATTCCACTTTCTCCTCCGCCTCATCGTATCTTTTATTTATAATGGGAGAGGACTGGGGCTGGAGGACCCTGATCCTTAGATTCATTGCTGCCACCATCCTTTAGGAAGCTTAGCTTGGAAAAAGAGGAGTGAGATTTATTGCACTTGTAGGTCTAATTAGGGGGAAGGGGGGCTTCTGGCCTGTTCACTGGCTCCCTCTCCTCTTCAGGGACCTGGGGCCGCCTCCTCCCGAGCTGTGGCCTTGTTTTCACCCCTATACTTTGAAAGGAAAGTTTGTGACTGAACCCTGCTTTTATAGTAGTGTCATTTTTAAAGCTTGATACTCGTTTTATTTCTTCATCAAACTCCACCCTCTGTTTAAATACTGCATACAAATTACAATTTACAACGGCATTTACCGATCCTTCTGATTTGGCTATAATGCATAAGCTGCAGCTGGCATGAGCTTCTGCATCGATGTGTGGGTTGTTTTTTTTTTTTTTAAGCACAACTTTTGATGTTGGATTTGGATATACTTCATGTTCATGTGGCATGAGATGGAACACTTTTTTTACAAATATATTTAGTGGTTTATAGTTAAAGTTTATCTCCTGACAATCATTAAAGATATAGTCAAATTAGTGAACCAGTCAATTTCGAAGAATGTAGATTACTTCTCCTTGTAATGGCTTAAAATTATATTTTATATACCACAAGAAAAGAAATTGGATTCCTTCAGATCTCAAGGAAGAGGCAAATATGATGACTTCATTTCTAGCTCCAGGGAGATTCTGCAGGCATCTGGGGGGGGGGGGGCTTTGAATTGTGCTCTCATTTAATTGAAAAATAACTGCCAAGTTCAAAACTATAATTAGAAAAAGTATTCTAACCATTGTGTTTCAAGAGCGTAAACTGCACTGCAACTCTTGTTGGAAGTAGAACCAAAGAAAATAGAGCAGAGCCTGAGACAGGACAGCTCTGTGGACATGGACCTATCTCTACTAATTTGTTGGGGGGTGGCAGTTCAGTAGCCCTAACTTTCCCTAGCTTTGTCTTTGTTTACATGGCAATTTAAAATGCTGGCACTGTTGAAGTAAAACATACACATAAAAAAAAAACTTTGGTCAGCTTTAAGAACTCAAAGCATGCTTACGTTTTGCATGCAGATGGTTAATGAATCCAGTGTTTTTGCAGTTGCAAGCTCGTGCATTCACTGGGCAAAGCTGGCTGCAGGTTGCAGTGGCATCGCACAGGACAGACATTAATTATAGTTCCTACTTTTTTCAATAATGTTTGGCTACTGTAAGTTCAACTTTCTCTTGAAATTTTTACATGTTCTGTTGCTTTTAATAGTGAGAACTTTGTATGGGGTAGTCGGGAGGAGGGAAGGTGGGAGGAGGTGTGTATGATGTTTCTCGGGGTCCAAACTTGTAAGTGCTTAGTAAGATATGTAACTTGTATCTCTTTTAAAGATAATTCTGTAGCACTTTAGAGATTGTGGGAACATTTTATACACTTGCTGCATGTTTGCAAGTGAAGAGTGCACTAAGGTTTGTGGTTGGTACCACAGCCTTTCTCAGGTTTCACTTAAAAAAAAAAAAACCAACGTTGATTTGTATCATTCTGGAAGGTTGAATGGGGTTTCATTTATCTCTGTGTTGCTTCCTAGTAGCTGGGAGGTTGGGTGGTACTTTCTTACCCATCCTGAGCTAGGGGCCTTGCAGTCAGGCCTAGTTCTTCCCTGGCTGAAATAGCCAGGGATGTAGGCTATGGATGAACATATGGAGCCGGTGAAGGTAGATGACTTCACCCCAGATCTCCTGGCAGTGTGATCTGTGAGTAAAAACCAACAGGAGAAGATGCTTCGGGAGCGAGTGACTGAAGGAAAGAACTACATTGCGTTGGGTGTTCGCTGTGGCTCGGCGATGTTCACAAGCCCCCTGGATGCACATTGCCTCTTTTCTCTCTTTCTTTTTATCAG
Seq C2 exon
CGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCAATCCAGGCCAGTACGCACTCACAAACGGGGATCCCCTCAATGGCCACTGCTACCTGTCCGGCTACATCTCCCTGCTGCTGCGAGCAGAGCCCTACCCCACGTCGCGTTATGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGTTGGCCGCCCGCCTCCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCGTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTACGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCCCAGTGCTCCATGCCCCTGCACGTGGCGCCGCTGCTGGCAGCAGCCGGCCTACACGCCTCGCCCATGTCCGCGGACCGGGTCGTGGCCTTCATGGACCACATCCGCATCTTTCAGGAACAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCTGCCGAGTACAGCTGCCTCAAAGCCATCGTGCTGTTCACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014795:ENSRNOT00000020044:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.513 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=46.1)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]