HsaINT0115617 @ hg19
Intron Retention
Gene
ENSG00000175745 | NR2F1
Description
nuclear receptor subfamily 2, group F, member 1 [Source:HGNC Symbol;Acc:7975]
Coordinates
chr5:92919043-92924150:+
Coord C1 exon
chr5:92919043-92921192
Coord A exon
chr5:92921193-92923622
Coord C2 exon
chr5:92923623-92924150
Length
2430 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TCTCTCTTTCTTTTTGTCAGCGG
3' ss Score
7.59
Exon sequences
Seq C1 exon
CCTCTTTCTCCCCCCTCTCTCCCTCCTCTCCTCTCTCTCTCCTCTCTTCTCTGAACCTCTCTTCTCTTTCTCTTTTCTTACATATTCTACTAGTTGTTTTCCCCTTCTTCTTCTCCTTTCTCTCCTTTTTCTCCCTCCTCCTTGTCTCTTTTACTCCATTCCTGCAGAAGAGAGAGGGCTAAACTTAAAGAAAAAAAAAAGGAGGAGGAGGAGGAGGAGGCACCCCCTTCGTATTCTTCTTATCGTTATTTTATACATATATGATTTTTTTTGGAGGGAGGGTGTTGGTTGCCGGCTGAAGAGCACTTATTTAAAATACTAAAAAAAGAACATTTTTGGGCGATCTCCAGGGTTTTTTTAACTAGCTCTGTGTGTTATAGCAGAAGAAGCAGAAGAAGGAGCAAGAAAGAGGAAAAGAAGAGGATTATTTATTCGACCTACTTTGGATGTCTCTCTCGCTTTTCCTTTTTCCTTTTTTTGGCAATTATTTTCTTCTGATTTTTATTTTTTCTATTTCGCTGTGATTTCGTCGCCGGCGTGAATTATCCCGTATTTTTCTCCCCCTTCCGTCACCTCCCGAAAGAAGAAGGCAGCGAGAGCCCGGCGCCACCGGCACAACAAAAAGAGCAAAGTGTGTGATCTTCCTCGCCGGCTGCCTCCCGCTCTCCAGCGCTGCCTTCCTGAATGGCTGGCTGCGTCCGGCCCTGGACCTGGCCCCCCGACACCCGCGCGCCCTGATCGCCGGCGGCAGCCTCGCCCAGCGCCCTGCTCGGCTCACCGCGCTCCCCGCACTCCCGAGCCCGGCGAGGGCTCCCGCCGGGACAGCGGCGGCGCCGCGGGCGGCCCCGGCCTCCGCTCGCGCTCCGGCTGCGGCCCCGACTCCTGCTCGGACTCCGGCCCGGGTCCCGGCTCCTCCAGCGGCGCTCGCCGCAGCAGCTCCGGCGGCAGCTCCAGCGGCGCCTGCAGCCGCGACCTCCTCCTCCTCCGCCGCCGCCGCCGCCTCCGCCCTCGCCGGCTTCCTCTATGTCGGCTCAGCCCGCGCGCTGCGCGTAGCCCGAGCGGCCGGCGGGCGGGCGCCCGGCGCGGGTGAGCGACTGTGTGTGCGAGTGTGTGTGTGCGCGGGGGTGCGGGCGAGGCGGAGGGCGAGTGTGTGCGCGCGCCGTGGCCCATGCCCGCCGCCCCCGGCGCTGCGCCCCGCGCCGCTCCCGGCTGCCGCCTGTGCCATTTCTGATTTTGCAACTTGGGGAAGAAGAAAAAAGCGAGAGAAGGGAGCTTGCTCGCCGGGGGGTGGGGAGGGGGGAAGGAGAGCGCGGCCCCCCCAGGAACGGAGCGCGGGGGGAGCGGGCGAGGGGAGCAGGGGTGTTGGGGGGGGAGCCTGAGAGCCTGGGGGGGCTGCAAAAAGAGAGAAAGAAAACAGCAGGAACCACAACAAAACGCCAGCAGGGCGGGCGGGCGCGCAGCAGCAGCGGGGCGGCCGAGGCAGTAGCGGCGGCAGCGGCGGCGGCGGCGGAGGCAGCGGCCGGTGTCCGGCTCGGGCTCGGCTCCTGCGACCCCGGGGCGCCCGGCGGGCCCCCCGCCCCCTCCCCCTCCCCCCTTCCCCTTCCCCTTCCCCTCCCAGCGCGCCCGCGCGCCCCGCGGCCCTCGGCGAGCAGCTCGGCTCCCCCCAGCGCTCCCCGGGCCCAAAGATATGGCAATGGTAGTTAGCAGCTGGCGAGATCCGCAGGACGACGTGGCCGGGGGCAACCCCGGCGGCCCCAACCCCGCAGCGCAGGCGGCCCGCGGCGGCGGCGGCGGCGCCGGCGAGCAGCAGCAGCAGGCGGGCTCGGGCGCGCCGCACACGCCGCAGACCCCGGGCCAGCCCGGAGCGCCCGCCACCCCCGGCACGGCGGGGGACAAGGGCCAGGGCCCGCCCGGTTCGGGCCAGAGCCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAATTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGAACTTAACTTACACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAATACTGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAG
Seq A exon
GTGAATATTTCTTCTCTGCTTCTCTCCCCGCGCTTCGCCCGCCTCCCTGGCTCTTTCTTTCTTTCTCGCCCGGGTGGTTGCTGTGTGGGGCTGGGGCTCCTGTGGTCCCGGCCCGTCCCAGCTTTCCTTCTCCCGGCTGCCTTCCTCCCCCGGCGTCTCCCCCCGCCCTCCCCAGCTCGCTGCCGCTGCCTCCCCCTCCCGGCCTGCGCTCATCTCCCCGGCTCCCCCACCCCGCCCGCTGCCTGCTCAGGATTGTGTCCCTGAGATCGTGAGCTGTGGCTTAAAATCCCCTTCTTCCCTCTGTCTTGGATGTGCTCGGTGTGTGTCTCTTTCCCGCGTGTGCGTGAGGCTGCTTGGGGCTGTGCTGGCATGAACTTGGGGAGGGGTGCTTATTTCCCCCAGAAAACTCTGTTTCTGTGGTTTTTTTTCATTCCACTTTTCCCTCCACCTCTTCATACCCTTTATTTAAAATGGGGGAGGGCTGGGGGCTGGAGTACCCTGAACCATAGATTCATTGCTGCCATCATCCTTTTGGAAGCTTAGCTCGGAAAAAGAGGAGTGAGATTTATTGCACTTGTAGGTCTAATTAGGGGGGAAGGGGGGCTTCTGGCCCGTTCACTGGTTCCCTCTCTTCTTCACGGAGCTGGGGCCGCCTCCTCCAGAGCTGTGGCCTTGTTTTCACCCCTCTACTTTGAAAGGAAAGTTTGTGACTGAACCGTGCTTTCATAGTTGTGTCATTTTTTTTAAAGCATGATACTCGTTTTATTTCTTCATCAAACTCCACCCTCTGCTTAAATACTGCATACAAATTACAATTTACAACGGCATTTACCGATCCTTCTGATTTGGCCGTAATGCATAGACTGCAGCTAGCATGAGCTTCCACATCATTTAATCCCTGTGTTGTATGGGTTTGTTTTTTTTAAAAAAAAACACAACTTTTGATGTTGTATTTGGATATGCTTCATGTTCATGTGGCAAGAGATGCAGTACTTTTCTTATAAATATATTTAGCCGTTTACAGTTAAAGTTTATCTCTTGACAATCATTAAAGATGTCTTATAGTCAAATTAGCGAACCAGTCAATTTTGCAGAATGCAGATTACTCCTTCTTGTAATTGACTTTAAAATTATATTTTATATGCCACAAGAAAAGAAATTGAATTCCTTCAGATCTCAAGGAGCAGACAAATATGACTACTTCATTTCTAGCTCCAGGGAGATTTTGTAGGCATCTGAAAAAAAAAAAACTTTGAATTGTACTCTCACTTAATTGAAAAATAACTGCCAAGTTCAAAACTATAATTAGAAAAAAGTATTCTAGGCATTATGTTTCAAGAGCTTCAATTGCACTGGAACTTGCATTAAAATTAGAATCAAAGCAAACTTAAGAAAATAGAACAAAACCTGAAATAAGATAGCTACATGTACATGAACATATCTATATTAATTTGTTGGGGGAAGAGTTCAGTAGCCCTAACTTTTCCTAAAGTTGTCTTTGTTTATATGGCAATTTAAAACGCTGGCACTGTTGAAGTAAAACATACACATTTAAAAAAAAAAAAAAAAAAACTTTGGTCAGCTTTAAGAACTCAAAGCATGCTTACGTTTTGCATTCAGATGGTTAATGAATCCAGTGTTTTTGCAGTTGAAAGCTCGTGCATTCACTGGGCAAAAGCTGGCTGCAGGTTGCAGTGGCACCGCGCAGGACAGACATTAATTATATTTCCTACTTTTTTCAATAATGTTTGGCTACTGTAAGTTCAACTTTTTTTCTTGAAAATTTTCAATTTTCTGTTGCTTTTAATAGTGAGAACTTTGTATGGGGCGACGGGGAGGAGGGGAGAAGGGAGGGGTGCAGGATACTTGTTCTCTACTCAAAAGTTGTAAGTGGTTAGTAGGATATGTAACTTGTGTCTATTTTAAGAATTATTCTATAGCATTTTAAGAGAATGTGGAAACATTTTATCAGCAAAACGCTGCTTGCTTGCAAATGAGGAGGCCGCTAGGCATTTGCCTAGAACCACAACCTTTCTCCGGTTTCGCCTTTTTTTAACCCTGATTTTTTTTTTCCATTCTGGAGGGGTGAGTGGGGTTTCATTTATCTGTGTGTTCCCCCGTGGTGGCTTAGGGGTTGGATGACACTTTCTTGACCTTGCCAGGGTTGGGGCCCTGGAGTCAGGCCTAGCTCCGGCGGGGCTGACGTGGCCAGGGGCTCAGGCAGTGGCTGGACACACTGAGCTGTGGAGCTGGAGGGCCTCACCCCAGATCTCCTAGCGGTGTGGACTGTGAGAGCGAGCCGGAGAAGATGCGCGGGGCGCGTGTGGCTGCGGGAAGAGCTTCTGCATTGTGTTGGGTACGCTGCGGCGCGGCAATGTTCGCAAGCTCCCTGGATGCACATTGCCTCTTTTCTCTCTTTCTTTTTGTCAG
Seq C2 exon
CGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCAATCCAGGCCAGTACGCACTCACCAACGGGGACCCCCTCAACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCTGCGCGCCGAGCCCTACCCCACGTCGCGCTACGGCAGCCAGTGCATGCAGCCCAACAACATTATGGGCATCGAGAACATCTGCGAGCTGGCCGCGCGCCTGCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCCTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTACGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCCCAGTGCTCTATGCCGCTGCACGTGGCGCCGTTGCTGGCCGCCGCCGGCCTGCATGCCTCGCCCATGTCTGCCGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTCAAGGCGCTACACGTCGACTCAGCCGAGTACAGCTGCCTCAAAGCCATCGTGCTGTTCACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175745-NR2F1:NM_005654:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=45.2)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)