MmuINT0110514 @ mm10
Intron Retention
Gene
ENSMUSG00000069171 | Nr2f1
Description
nuclear receptor subfamily 2, group F, member 1 [Source:MGI Symbol;Acc:MGI:1352451]
Coordinates
chr13:78195162-78199757:-
Coord C1 exon
chr13:78198120-78199757
Coord A exon
chr13:78195690-78198119
Coord C2 exon
chr13:78195162-78195689
Length
2430 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TCTCTCTTTCTTTTTATCAGCGG
3' ss Score
8.98
Exon sequences
Seq C1 exon
TTTCGCTGTGAATTCGTCGCTGGCGTGAATTATCTCGTATTTTTCTCCCCCTTCCGTCACCTCCCGAAAGAAGAAGGCAGAGAGAACCCGGCGCCACCCGCACAACAAAAAGAGCAAAGTGTGTGATCTTCCTCGCCGGCTGCCTCCCGCTCTCCAGCGCTGCCTTCCTGAATGGCTGGCTGCGTCCGGCCCTGGACCTGGCCCCCAGACACCCGAGCGCCCTGATCCTCGCCGGCAGCTTCGTCCCGATCCTGCTCGACTCTCCCAGCTCCCCGCACTCTTGAAACCGGGCGAGGGCTCCCGCCAGGACAGCGGCGGCGGCACGGGCAGCACCGGCCTCGGCTCGCTCTCGGGCTGCGGCCCCGACTCCGGCTCGGACTCCCGCCCGGGCCCGGGCTCCTCCAGCGGAGCACGCAGCGGCGGCCAGCTCCTCCAGCAGCGTCTGCAGCCGCGACCTCCTCCTCCGCGGCCGCCGCCGCCCTCGCCGCTTCCTCTATGTCGGCTCAGCCCGCGCTCTGCGCGTAGCCCCAGCGGCCAGCGGCCAGCGGGCGGGCGGGCGGGCGGGCGGGCGCCCGGCGCGGGTGAGCGAGTGTGTGTGCGAGTGTGTGTGTGCGCGGGGGTGCGGGCGAGGCGGAGGGCGAGAGTGTGCGCGCGCCGTGGCCCATGCCCGCCGCCCCCGGCGCTGCGCCCCGCGCCGCTCCCGGCTGCCGCCTGTGCCATTTCTGATTTTGCAAGTTGGGGAAGAAGAAAAAAGCGAGAGAAGGGAGCTCGCTCGCTGGGGGGTGGGGAGGGGGGAGAGAGAGAGAGGCCCCCCCAGGAACGGAGTGCGGGGGGAGCGGGCGAGGGGAGCAGGGGTGTTGGGGGGGGGGAGCCTGAGAGCCTGGGGGGGCTGCAAAAAGAGAGAAAGAAAACAGCAGGAACCACAACAAAACGCCAGCAGGGCGGGCGGGCGCGCAGCAGCAGCGGGGCGGCTGAGGCAGTAACGGCGGCGGCGGCGGCGGCGGCGCAGGCAGAGGCCGGTGCCCGGCTCGGGCTCGGCTCCGGCGACCCCGGGGCGCCCGGTGGGCCCCCCGCCCCCTCCCCCTCCCCCCTTCCCCTTCCCCTTCCCCTCCCAGCGCGCCCGCGCGCCCCGCGGCCCTCGGCGAGCAGCTCGGCTCCCCCCAGCGCTCCCTGGGCCCAAAGATATGGCAATGGTAGTTAGCAGCTGGCGAGATCCGCAGGACGACGTGGCCGGGGGCAACCCCGGCGGCCCCAACCCCGCAGCGCAGGCAGCCCGCGGCGGCGGCGGCGGCGAGCAGCAGCAGGCGGGCTCCGGCGCGCCGCACACGCCGCAGACCCCGGGCCAGCCCGGAGCGCCCGCCACCCCCGGCACGGCAGGGGACAAGGGCCAGGGCCCGCCCGGTTCAGGCCAGAGCCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAATTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGAACTTAACTTACACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAATACTGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAG
Seq A exon
GTGAATATTTCTTCTCTGCTTCTCTCCCTGCGCTTCGCCCGCCTCCCTGCTCTTTCTTTCTCTCTCGCCTTGGTGCCTGTGGCTGTGGGGATGGGGCTTCTGTGGTCCCAGCCGGTCCGGGCTTCCCAGTCTTCGCTGCTTTCCTCCCCCAGCGTCCCCCCCCCCCCAGCTCGCTGCCGCTGCCTCCCCCTCCCGCCCTGCGCTCCTCTCCCCGGCTCCTCCACCCCGCCCGCTGCCTGCTCAAGATTGTGTCCCTGGGATCGTGAGCTGTAGCTTAAAAATCCCTCCCTTCCTCTGTTGGATGTGCTCCGTGTGTGTCTCGTTCCCGCTTGTGTGTGAGGATGCTTGGGGCTGTGCTAGCATGAACTTGGGAGGGGTGATGATTTTCTGCAGAAAACCGTTTCTCTCCGTGTGTGTTTTTGTTTTTTGGTTTTTTTTGTTTTTCCCATTCTACTTTCTCCTCTGCCTCATCGTACCTTTTATTTATAATGGGAGAGGACTGGGGCTGGAGGACCCTGAACCATAGATTCATTGCTGCCACCATCCTTTAGGAAGCTTAGCTTGGAAAAAGAGGAGTGAGATTTATTGCACTTGTAGGTCTAATTAGGGGGGAAGGGGGGCTTCTGGCCTGTTCACTGGCTCCCTCTCCTCTTCAGGGATCTGGGGCCGCCTCCTCCCGAGCTGTGGCCTTGTTTTCACCCCTATACTTTGAAAGGAAAGTTTGTGACTGAACCCTGCTTTCATAGTAGTGTCATTTTTAAAGCTTGATACTCGTTTTATTTCTTCATCAAACTCCACCCTCTGCTTAAATACTGCATACAAATTACAATTTACAACGGCATTTACCGATCCTTCTGATCTGGCTATAATGCACAGACTGCAGCTGGCTTGAGCTTCTGCATCATTTAATCGATGTGTGAGATTTTTTTTTTATTAAGCACAACTTTTGATGTTTAATTTGGATATGCTTCATATTCATGTGGCATGAGATGGAACACTTTTCTTACAAATATATTTAGCGGTTTATAGTTAAAGTTTATCTCCTGGCAATCATTAAACATATCTTATAGTCAAATTAGTGAACCAGTCAATTTCGAAGAACATAGATTACTTCTTCTTGTAATTGACTTCAAAATTATATTTTATATGCCACAAGAAAAGAAATTGAATTCCTTCAGATCTCAAGGAGAAGGCAAATATGACGACTCCATTGCTAGCTCCAGGGAGATTGTTTAGGCATCTGAAAAAAAAAAAAACAAAAAACAAAAAAAAACAAAAAAACTTTGAATTGTGCTCTCATTTAATTGAAAAATAACTGCCAAGTTCAAAACTATAATTAGAAAAAGTATTCTAACCATTGTGTTTCAAAGAGCGTAAACCGCACTGAAACTCTTGTTGGAATTAGAACCAAAGAAAATGATGTAGAGCCTGAGGTAGGACAGCTCTGTGGACATGGACCTCGCTCTACTAATTTGTTGGGGGATGGCAGTTCAGTAGCCCTAACTTTCCCTAGAGTTGTCTTTGTTTACATGGCAATTGAAAATGCTGGCACTGTTGAAGTAAAACATACACATTTAAAAAAAAAAAAAAAAAACTTTGGTCAGCTTTAAGAACTCAATGCATGCTTACGTTTTGCATTCAGATGGGTAATGAATCCAGTGTTTTTGCAGTTGCAAGCTCGCGCATTCACTGGGCAAAGCTGGCTGCAGGTTGCAGTGGCATCGCACAGGACAGACATTAATTGTAGTTCCTACTTTTTTTCAATATGTTTGGCTACTGTAAGTTCAACTTCTTTGAAATTTTTTAATTTTCTGTTTCTTTTAATAGTGAGAAATTTGTATGGGGCAGTCTGGAGGAGGGAAGATGGGAGGAGGTGTGTGTTATGCTTGCTGGTAGTCCAACTCAGTAAGATATATATATATAACTTGTATCTTTTAAAAATTATTCTGTAGCACTTTAGAGATTATGGGAACATTTTATACACTTGCTGCTTGTTTACAAGTGAAGAGTACTCTAAGGTTTGTGGCTTTCTCAGGTTTCATTTTTAAAAGAGAAACTTTGATTTGTATCATTCTGAAAGGATTTCATTTATATCTGTGTTGCTTCTTAGTAGCTGGGAGGTTGGGTGGTACTTTCTTAGCCATCCTGAGCTAGGGGCCTTGCAGTCAGGCCTAGTTCTTCTTCTCTAGCTAAAATAGCCAGGGATGCAGACTATGGATGGACACACGGAGCCGGTGAAGGTAGATGACTTCACCCTAGATCTCCTAGCAGTGTGATCTGTGAGTAAGACCCAGCAAGCAGGAGAAGATGCTTCGGGAGCGAGTGACTGCAGGAAAGAACCACAGTGCGTTGGGTGCGCGCTGCGGCTCGGCGATGTTCACAAGCCCCCCTGGATGCACATTGCCTCTTTTCTCTCTTTCTTTTTATCAG
Seq C2 exon
CGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCAATCCAGGCCAGTATGCACTCACAAACGGGGATCCTCTCAATGGCCACTGCTACCTGTCTGGCTACATTTCTCTGCTGCTGCGCGCAGAGCCCTACCCCACGTCGCGTTATGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGCTGGCAGCCCGCCTCCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCGTTCTTCCCGGATCTGCAGATCACGGACCAGGTGTCTCTGCTGCGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCCCAGTGCTCCATGCCCCTGCACGTGGCGCCGCTGCTGGCCGCAGCCGGCCTGCACGCCTCGCCCATGTCCGCGGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTTCAGGAACAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCTGCCGAGTACAGCTGCCTCAAAGCCATCGTGCTATTCACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069171:ENSMUST00000091458:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=46.1)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types