BtaINT0103659 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34357431-34357986:-
Coord C1 exon
chr26:34357882-34357986
Coord A exon
chr26:34357539-34357881
Coord C2 exon
chr26:34357431-34357538
Length
343 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGC
5' ss Score
7.1
3' ss Seq
TACATGTGTTCTTACCGTAGGCA
3' ss Score
8.79
Exon sequences
Seq C1 exon
CGCCTCTATAAAGCAGCGGGGGAAGATGCGAGACACCAGTACACAATGACCCTGGGCCTGCCCGAGTTTGTCCGAGCGAAAACAAACGCGGCCAATCTGAGTGAC
Seq A exon
GTAAGCCTTTCCCATCGCTGAGGTTGAGATGATCTCCAAGGCCAAGTCTCTGTCTGTGATGGGACTTAACAGTGACCCTACTGGCATTCGCAGAAACTTTCAACCATGTATCTGGTCGACATGCATGTTAAACATACCTTTTCCCAGATGTGTTGATATGTATGTGTCAGAGCCCACTTCCGGGAGGGTGCTAATGAGATTTTCTTTGCCAAGTCGAAAGCTTTTGCTTGTCAGAAATCTGTTCTGCGACACTACATGACAAATGAAGTGGGTAGCCTTTGTTCATGAAGTCGTGTAATTTTTTTGTTTGTTTTCTTAAGATCTACATGTGTTCTTACCGTAG
Seq C2 exon
GCAAAATACAAGGAGTCTTGGAGGAATCTCCATGCTCAAGGCTACAAGCTAACAATAGATGCTCTGCCCTTCCAGGCGGCTCGAGTCTCTGGAGACATAGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327:ENSBTAT00000025740:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.7=42.9)
A:
NA
C2:
PF0088013=Nebulin=PD(34.6=25.0),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTATAAAGCAGCGGGGGA
R:
TCTCCAGAGACTCGAGCCG
Band lengths:
198-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]