GgaINT0041850 @ galGal3
Intron Retention
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28922942-28923507:-
Coord C1 exon
chr6:28923403-28923507
Coord A exon
chr6:28923050-28923402
Coord C2 exon
chr6:28922942-28923049
Length
353 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
ATGTGCCTCTCCTACTTTAGGTG
3' ss Score
11.2
Exon sequences
Seq C1 exon
CGCCTTTATAAAGCAGCGGGAGAGGACATTCAGCATCACTATACACCAACACTGGGTCTGCCTGAGTTCACACAAGCAAGAATAAACGCAGCCAACCTCAGTGAT
Seq A exon
GTAAGTTTTTGTATTTCTTAAACTCATTTGAGTTGGAGGATAAATTGTGCAGTGGCAAGGAAGGAGAATAAGTAAAGGACTTCTTAGATCTGTTCTATTTATGCTTTCCCTGATTTGATTATAATGATATTTATTTCCATTAGCATACATGTATTTGTAAATTAAATCTACATGAAATATAGGACTTGCTTTGCCTGAGATAGTAGGATTTCCTCAAGATAATTAAAAAAAAAAATTCCTTTGATTATGAAGAATGAGTTACTCAGAATAACAAATGAAAGAGGGTTCCTTTGTTTATTCCTTTGTGCATTTAAAAGCGGAAGAGCAATCTACATGTGCCTCTCCTACTTTAG
Seq C2 exon
GTGAAATACAGGGAATCTTGGCATAATCTATGTGCTCAAGGCTACAAGCTGACAATGGAAGCACTCCCTTTCCAGACTGCGAGGGCCTCCAGAGAAATTGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914:ENSGALT00000014498:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.7=42.9)
A:
NA
C2:
PF0088013=Nebulin=PD(34.6=25.0),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTTATAAAGCAGCGGGA
R:
GCAATTTCTCTGGAGGCCCTC
Band lengths:
206-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]