MmuINT0110612 @ mm10
Intron Retention
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56336043-56336586:-
Coord C1 exon
chr19:56336482-56336586
Coord A exon
chr19:56336151-56336481
Coord C2 exon
chr19:56336043-56336150
Length
331 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
TACCTGTGTTCCCACTTTAGGCA
3' ss Score
9.36
Exon sequences
Seq C1 exon
CGTCTCTATAAAGCGGCTGGCGAGGACGCACGGCACCAATACACGATGACCCTTGGTCTGCCTGAGTTCATCCGAGCCAAAACCAACGCAGCCAACCTGAGCGAG
Seq A exon
GTCAGCCTTTCTCCCTGCCGAAGTCCAAGAATGGTAGCCTGAAGCTACCTGTAATGCCTGCTCTGAGCGATCCAACAGCCGCTTCCCCACTCTGTGTCGAAGTTTTTAAAAAGCATCCAATGTAGATGCCCATGTAAAATCCACATGCGTGTTATATATACATGTATGCTCAGAGCCTACATGTGCTAATGAGAGTTTGCTCTGTGAAGCTGAAGGCGTTTGCTGCTCACAAATGGATTCTAGGACACCTTGCCACAATGATAGGGCATGCACCCTTTGCTAATCGATTCACGTGTGTTCTTGAAAAGATATACCTGTGTTCCCACTTTAG
Seq C2 exon
GCAAAATACAAGGAGGCTTGGCATAATCTTCGTGCTCAAGGCTACAAGCTGACGATAGACGCCCTCCCCTTCCAGGCTGCTCGGGCCTCTGGAGACATAGCCAGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134:ENSMUST00000073536:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(53.6=42.9)
A:
NA
C2:
PF0088013=Nebulin=PD(39.3=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCTATAAAGCGGCTGGC
R:
GGCTATGTCTCCAGAGGCCC
Band lengths:
207-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types